| Sequence ID | dm3.chr3R |
|---|---|
| Location | 19,274,224 – 19,274,336 |
| Length | 112 |
| Max. P | 0.925837 |
| Location | 19,274,224 – 19,274,336 |
|---|---|
| Length | 112 |
| Sequences | 5 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 89.99 |
| Shannon entropy | 0.17644 |
| G+C content | 0.48530 |
| Mean single sequence MFE | -31.55 |
| Consensus MFE | -25.37 |
| Energy contribution | -26.65 |
| Covariance contribution | 1.28 |
| Combinations/Pair | 1.03 |
| Mean z-score | -2.33 |
| Structure conservation index | 0.80 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.32 |
| SVM RNA-class probability | 0.925837 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 19274224 112 + 27905053 CCUACUUUCAUUGCGGCCCAUUGUAUCAAUUUCACUGGGCCAAAAGCGUAG--CCAU---ACACCACAACUGCUUUUGGCCCAUCAGUGUCAGGCUGUCAGUCAGUCAGCACAAAAA- .(((((...((((((((((((((............(((((((((((((...--....---..........))))))))))))).)))))...))))).)))).))).))........- ( -31.95, z-score = -2.35, R) >droEre2.scaffold_4820 1694836 113 - 10470090 CCUACUUUCAUUGCGUCCCAUUGUAUCAAUUUCACUGGCCCAAACGCCUAG--CCAU---AGAGCACAACUGCUUUUGGCCCAUCAGUGUCAGCCUGUCAGUCAGUCAGCAAAAACCA ..........((((..(..((((.........(((((((......)))..(--(((.---((((((....)))))))))).....)))).........))))..)...))))...... ( -23.67, z-score = -1.10, R) >droYak2.chr3R 20156897 118 + 28832112 CCUACUUUCAUUGCGGCCCAUUGUAUCAAUUUCAGUGGGCCAAACGCAUAGAGCCAUCGAGCACAACAACUGCUUUUGGCCCAUCAGUGUCAGGCUGUCAGUCAGUCAGCAAAAAAAA ..........(((((((((((((.........)))))))))....((((.((((((..(((((.......))))).))))...)).))))..(((((.....))))).))))...... ( -38.80, z-score = -3.74, R) >droSec1.super_0 19636996 107 + 21120651 CCUACUUUCAUUGCGGCCCAUUGUAUCAAUUUCACUGGGCCAAAAGCGUAG--CCAU---ACAGCACAACUGCUUUUGGCCCAUCAGUGUCAGGCUGUCAGUCAGUCAGCGC------ .(((((...((((((((((((((............((((((((((((((.(--(...---...))...)).)))))))))))).)))))...))))).)))).))).))...------ ( -33.72, z-score = -2.33, R) >droSim1.chr3R 19094126 113 + 27517382 CCUACUUUCAUUGCGGCCCAUUGUAUCAAUUUCACUGGGCCAAAAGCGUAG--CCAU---ACACCACAACUGCUUUUGGCCCAUCAGUUUCAGGCUGUCAGUCAGUCAGCACAAAAAU .(((((...(((((((((.((((...)))).....(((((((((((((...--....---..........))))))))))))).........))))).)))).))).))......... ( -29.63, z-score = -2.14, R) >consensus CCUACUUUCAUUGCGGCCCAUUGUAUCAAUUUCACUGGGCCAAAAGCGUAG__CCAU___ACACCACAACUGCUUUUGGCCCAUCAGUGUCAGGCUGUCAGUCAGUCAGCACAAAAA_ .(((((...((((((((((((((............(((((((((((((......................))))))))))))).)))))...))))).)))).))).))......... (-25.37 = -26.65 + 1.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:37:56 2011