Locus 11183

Sequence ID dm3.chr3R
Location 19,269,182 – 19,269,272
Length 90
Max. P 0.562513
window15361

overview

Window 1

Location 19,269,182 – 19,269,272
Length 90
Sequences 5
Columns 99
Reading direction reverse
Mean pairwise identity 93.80
Shannon entropy 0.10461
G+C content 0.54283
Mean single sequence MFE -30.45
Consensus MFE -26.86
Energy contribution -27.06
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.48
Structure conservation index 0.88
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.14
SVM RNA-class probability 0.562513
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3R 19269182 90 - 27905053
--------AAGCACUAGUAGUUGGCUUAGUAGUGG-CUGCCACAAAAUUGAGCCCGAGCCAAAGACGUGGCCCAAACGAGCUGCGACUAAGUGGACGGA
--------...........(((.(((((((.(..(-(((((((....(((.((....)))))....))))).......)))..).))))))).)))... ( -29.91, z-score =  -1.51, R)
>droEre2.scaffold_4820 1689681 90 + 10470090
--------GAGCACUAGUAGUUGGCUUAGUAGUGG-CUGCCACAAAAUUGAGCCCGAGCCAGAGACGUGGCCCAAACGAGCUGCGACUAAGUGGACGGA
--------...........(((.(((((((.(..(-(((((((....(((.((....)))))....))))).......)))..).))))))).)))... ( -29.61, z-score =  -1.33, R)
>droYak2.chr3R 20151678 99 - 28832112
UAGUAGUAAGCCACUAGUAGUUGGCUUAGUAGUGGCCUGCCACAAAAUUGAGCCCGAGCCAAAGACGUGGCCCAAACGAGCUGCGACUAAGUGGACGGA
.........((((((.((((((((((((((.((((....))))...)))))))).(.((((......)))).).....)))))).....))))).)... ( -32.60, z-score =  -1.74, R)
>droSec1.super_0 19632008 90 - 21120651
--------GAGCACUAGUAGUUGGCUUAGUAGUGG-CUGCCACAAACUUGAGCCCGAGCCAAAGACGUGGCCCAAACGAGCUGCGACUAAGUGGACGGA
--------...........(((.(((((((.(..(-(((((((...(((..((....))..)))..))))).......)))..).))))))).)))... ( -30.21, z-score =  -1.28, R)
>droSim1.chr3R 19087403 90 - 27517382
--------GAGCACUAGUAGUUGGCUUAGUAGUGG-CUGCCACAAAAUUGAGCCCGAGCCAAAGACGUGGCCCAAACGAGCUGCGACUAAGUGGACGGA
--------...........(((.(((((((.(..(-(((((((....(((.((....)))))....))))).......)))..).))))))).)))... ( -29.91, z-score =  -1.54, R)
>consensus
________GAGCACUAGUAGUUGGCUUAGUAGUGG_CUGCCACAAAAUUGAGCCCGAGCCAAAGACGUGGCCCAAACGAGCUGCGACUAAGUGGACGGA
...........((((.((((((((((((((.((((....))))...)))))))).(.((((......)))).).....)))))).....))))...... (-26.86 = -27.06 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:37:55 2011