| Sequence ID | dm3.chr3R |
|---|---|
| Location | 19,265,583 – 19,265,684 |
| Length | 101 |
| Max. P | 0.647971 |
| Location | 19,265,583 – 19,265,684 |
|---|---|
| Length | 101 |
| Sequences | 11 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 69.27 |
| Shannon entropy | 0.61836 |
| G+C content | 0.47505 |
| Mean single sequence MFE | -31.57 |
| Consensus MFE | -7.12 |
| Energy contribution | -7.51 |
| Covariance contribution | 0.40 |
| Combinations/Pair | 1.13 |
| Mean z-score | -2.39 |
| Structure conservation index | 0.23 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.33 |
| SVM RNA-class probability | 0.647971 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr3R 19265583 101 - 27905053 ---------------CGGCGGCCAUUUGUGUUUCGAUUUUGGCCACAAGAGCUUGGCGGUUUUUUUUUUUCAGUCGGUUUUUGGUCAAAACAAGAUCGCAGCAAGUGGCACGCAAU ---------------..((((((((((((....((((((((....((((((((.(((...............))))))))))).......))))))))..))))))))).)))... ( -36.56, z-score = -3.72, R) >droSim1.chr3R 19083788 96 - 27517382 ---------------CGGCGGCCAUUUGUGUUUCGAUUUUGGCCACAAGCGCUCGGCGGUUUUUUC-----AGUCGGUUUUUGGUCAAAACAAGAUCGCAGCAAGUGGCACGCAAU ---------------..((((((((((((....((((((((((((.((((...((((.........-----.)))))))).))))))).....)))))..))))))))).)))... ( -36.50, z-score = -3.38, R) >droSec1.super_0 19628452 96 - 21120651 ---------------CGGCGGCCAUUUGUGUUUCGAUUUUGGCCACAAGCGCUCGGCGGUUUUUUC-----AGUCGGUUUUUGGUCAAAACAAGAUCGCAGCAAGUGGCACGCAAU ---------------..((((((((((((....((((((((((((.((((...((((.........-----.)))))))).))))))).....)))))..))))))))).)))... ( -36.50, z-score = -3.38, R) >droYak2.chr3R 20147819 86 - 28832112 --------------ACGGCGGCCAUUUGUGUUUCGAUUUUGGCCACAAGCGCUCGUUCGGUUUU----------------UUGGUCAAAACAAGAUCGCAGCAAGUGGCACGCAAU --------------...((((((((((((....((((((((((((.(((.(((.....))).))----------------)))))))).....)))))..))))))))).)))... ( -31.30, z-score = -2.68, R) >droEre2.scaffold_4820 1685966 85 + 10470090 ---------------CGGCGGCCAUUUGUGUUUCGAUUUUGGCCACAAGCGCUUGGCGGUUUUUUU----------------GGUCAAAACAAGAUCGCAGCAAGUGGCACGCAAU ---------------..((((((((((((....((((((((((.....))..(((((.(......)----------------.)))))..))))))))..))))))))).)))... ( -33.30, z-score = -3.04, R) >droAna3.scaffold_13340 3409561 83 + 23697760 ------------------------UUUGGGUUGCGAUUUUGGCCACAAGCGGUCGGCCGUUUAUAG---------AGUUUUUGGUCAAAACGAGAUCGCAGCAAGUGGCACGCAAU ------------------------.....(((((((((((((((......))))(((((.......---------......))))).....)))))))))))..(((...)))... ( -25.52, z-score = -1.38, R) >dp4.chr2 2748482 100 - 30794189 ---------GCCAAACGGCGGCCAUUUGUGUUUCGUUUUGGGCCACAAGCGCUCUUGGCUUUUUAG-------UGCUCUUUUGGUCAAAACGAGAUCGCAGCAAGUGGCACGCAAU ---------........((((((((((((((((((((((((.(((.(((.((.((.........))-------.)).))).)))))))))))))))....))))))))).)))... ( -40.90, z-score = -3.44, R) >droPer1.super_7 2841707 100 + 4445127 ---------GCCAAACGGCGGCCAUUUGUGUUUCGUUUUGGGCCACAAGCGCUCUUGGCUUUUUAG-------UGCUCUUUUGGUCAAAACGAGAUCGCAGCAAGUGGCACGCAAU ---------........((((((((((((((((((((((((.(((.(((.((.((.........))-------.)).))).)))))))))))))))....))))))))).)))... ( -40.90, z-score = -3.44, R) >droWil1.scaffold_181130 9306499 109 - 16660200 GCAGUUGCCAUUUGUGUUUUGUGUCC-AAUUU--UUUUUUGGCCAGCAGCAAUGGUUUUUUUUUUUU----AGUUUCAUUUUGGUCAAAACGAGAUCUCAGCAAGUGGCACGUAAU ...((.((((((((((((((((....-.....--...(((((((((....(((((..((........----))..)))))))))))))))))))))....)))))))))))..... ( -26.30, z-score = -1.73, R) >droVir3.scaffold_13047 8898475 77 - 19223366 ------------------CUGCAAC--CAAUU--GGUUUUGGCCUGUAGCAC-------------AU----UUUAUUUUUUUGGUCAAAACGAGAUCGCAGCAAGUGGCACGCAAU ------------------.(((..(--((.((--((((((((((........-------------..----...........)))))))))(....)....))).)))...))).. ( -16.40, z-score = 0.27, R) >droMoj3.scaffold_6540 2377719 92 + 34148556 ------------------CUGCAACUGCAAUU--GGUUAUGGCCUGCAGCACUUGUCGUUAUUUUUU----UUUUUUUUUUUGGUCAAAACGAGAUCGCAGCGAGUGGCACGCAAU ------------------.(((..(((((...--(((....))))))))(((((((.((.(((((.(----(((..((....))..)))).))))).)).)))))))....))).. ( -23.10, z-score = -0.37, R) >consensus _______________CGGCGGCCAUUUGUGUUUCGAUUUUGGCCACAAGCGCUCGGCGGUUUUUUU_______U_GGUUUUUGGUCAAAACGAGAUCGCAGCAAGUGGCACGCAAU ....................((..............((((((((......................................))))))))...(.((((.....)))))..))... ( -7.12 = -7.51 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:37:54 2011