Locus 11181

Sequence ID dm3.chr3R
Location 19,265,319 – 19,265,423
Length 104
Max. P 0.595669
window15359

overview

Window 9

Location 19,265,319 – 19,265,423
Length 104
Sequences 4
Columns 104
Reading direction reverse
Mean pairwise identity 94.71
Shannon entropy 0.08581
G+C content 0.49519
Mean single sequence MFE -18.02
Consensus MFE -15.90
Energy contribution -15.15
Covariance contribution -0.75
Combinations/Pair 1.17
Mean z-score -1.58
Structure conservation index 0.88
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.21
SVM RNA-class probability 0.595669
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3R 19265319 104 - 27905053
AAUCCGCACCACUUGGAGUCACUGCAUCCCCGCACCCGUGGACCACUGCACCACUUCCCUCCGAAAGAGUGUAUCUUUUAAUUCAAUCAAUUUUUCUCACAGCU
.....(((((..((((((....(((......)))...((((.........))))....))))))..).))))................................ ( -17.20, z-score =  -0.92, R)
>droSim1.chr3R 19083524 104 - 27517382
AAUCCGCACCACUCGGAGCCACUGCAUCCGCGCACCCAUGCACCACUGCACCACUUCCCUCCGAAAGAGUGUAUCUUUUAAUUCAAUCAAUUUUUCUCACAGCU
.....(((((..((((((....(((......)))....((((....))))........))))))..).))))................................ ( -17.80, z-score =  -1.88, R)
>droSec1.super_0 19628188 104 - 21120651
UAUCUGCACCACUCGGAGCCACUGCAUCCGCGCACCCAUGCACCACUGCACCACUUCCCUCCGAAAGAGUGUAUCUUUUAAUUCAAUCAAUUUUUCUCACAGCU
....((((((..((((((....(((......)))....((((....))))........))))))..).)))))............................... ( -18.50, z-score =  -1.99, R)
>droEre2.scaffold_4820 1685696 104 + 10470090
AAUCCGCACCACUCGGAGCCACUGCAUCCGCACAGCCAUGCGCCACUGCACCACUUCCCUCCGAAAGAGUGUAUCUUUUAAUUCAAUCUAUUUUUCUCACAGCU
.....(((((..((((((....((((..((((......))))....))))........))))))..).))))................................ ( -18.60, z-score =  -1.54, R)
>consensus
AAUCCGCACCACUCGGAGCCACUGCAUCCGCGCACCCAUGCACCACUGCACCACUUCCCUCCGAAAGAGUGUAUCUUUUAAUUCAAUCAAUUUUUCUCACAGCU
.....(((((..((((((....((((...(((......))).....))))........))))))..).))))................................ (-15.90 = -15.15 +  -0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:37:53 2011