| Sequence ID | dm3.chr3R |
|---|---|
| Location | 19,253,001 – 19,253,117 |
| Length | 116 |
| Max. P | 0.720320 |
| Location | 19,253,001 – 19,253,117 |
|---|---|
| Length | 116 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 77.98 |
| Shannon entropy | 0.42025 |
| G+C content | 0.46624 |
| Mean single sequence MFE | -29.71 |
| Consensus MFE | -12.36 |
| Energy contribution | -11.95 |
| Covariance contribution | -0.41 |
| Combinations/Pair | 1.42 |
| Mean z-score | -2.27 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.50 |
| SVM RNA-class probability | 0.720320 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 19253001 116 - 27905053 CCGCUUCCUGCUCCUACCAAUUUGUGAAUUCAGUACAUUAACCGAUUUGUCCAAUGAUCCCGACCGAUGAUGCUAUGUGCUCAUAGUAUCCUAUCGCCGCGGGAGUAUGCAAAUUC ..((.....)).......(((((((....(((..(((..........)))....)))(((((..(((((((((((((....)))))))))..))))...)))))....))))))). ( -28.70, z-score = -2.18, R) >dp4.chr2 2735456 110 - 30794189 AAGCAACUUCCUGUUGAUGAUCCACAUA-CUAGUACAUAAACUGAUUUGUUGAUCCGAUCCGAUCG--GAUCACAUCAGAUCUCUCUCUC---UCUCGGAGACAGUAUGCAAAUCU ...((((.....))))..(((...((((-((............((((((.(((((((((...))))--)))))...))))))..(((((.---....))))).))))))...))). ( -30.20, z-score = -2.51, R) >droEre2.scaffold_4820 1673326 115 + 10470090 -CGCUUCCUGCUCCUGCCAAUUUGCGAAUCCACUACAUAAACCGAUUUGUCCAUUGAUCCCGACCGAUGAUGCGAUGUGAUCACACAAUCCGAUCGCCGCGGGAGCAUGAAAAUUC -...(((.(((((((((((((..(((((((.............)))))))..))))...............(((((..(((......)))..))))).))))))))).)))..... ( -32.42, z-score = -2.44, R) >droYak2.chr3R 20133391 115 - 28832112 -CGCAUCCUGCUUCUGCCAAUUUGCAAGUCCACUAUAUAAACCGAUUUGCCCAUUGAUCCCGACCGAUGAUGCCAUGUGAUCAUACAAACCGAUCGCCGCGGGAGUAUGCUAAUUC -.((((...((((((((......(((((((.............))))))).(((((........))))).......((((((.........)))))).))))))))))))...... ( -28.92, z-score = -1.87, R) >droSec1.super_0 19615852 116 - 21120651 CCGCUUCCUGCUCCUACCAAUUUGUGAAUUCAGUACAUAAACCGAUUUGUCCAUUGAUCCCGACCGUUGAUGCUAUGUGAUCAUAGUAUCCUAUCGCCGCGGGAGUAUGCAAAUUC ..((.....)).......(((((((....(((((..(((((....)))))..)))))(((((..((..(((((((((....)))))))))....))...)))))....))))))). ( -28.50, z-score = -2.19, R) >droSim1.chr3R 19070952 116 - 27517382 CCGCUUCCUGCACCUACCAAUUUGUGAAUCCAGUACAUAAACCGAUUUGUCCAUUGAUCCCGACCGUUGAUGCUAUGUGAUCAUAGUAUCCUAUCGCCGCGGGAGUAUGCAAAUUC ........((((..(((((((..(..((((..((......)).))))..)..)))).(((((..((..(((((((((....)))))))))....))...))))))))))))..... ( -29.50, z-score = -2.42, R) >consensus CCGCUUCCUGCUCCUACCAAUUUGCGAAUCCAGUACAUAAACCGAUUUGUCCAUUGAUCCCGACCGAUGAUGCUAUGUGAUCAUACUAUCCUAUCGCCGCGGGAGUAUGCAAAUUC ..((.((((((......((((..(((((((.............)))))))..))))....................(((((...........))))).)))))))).......... (-12.36 = -11.95 + -0.41)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:37:51 2011