| Sequence ID | dm3.chr3R |
|---|---|
| Location | 19,227,492 – 19,227,605 |
| Length | 113 |
| Max. P | 0.694859 |
| Location | 19,227,492 – 19,227,605 |
|---|---|
| Length | 113 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 70.50 |
| Shannon entropy | 0.51919 |
| G+C content | 0.54574 |
| Mean single sequence MFE | -26.39 |
| Consensus MFE | -16.23 |
| Energy contribution | -16.23 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.14 |
| Mean z-score | -0.91 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.44 |
| SVM RNA-class probability | 0.694859 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 19227492 113 - 27905053 ----AUAUGUUUUGGUGCACUUCACUGGAUUUGGCUGAUGCGUCAGCACUUGACCCGCACUCAGCCCCAUCUGGUUGAAUUCCCUCCGGAUCGUCCUCAUUCUCCUCAUCCUCCAUC ----..(((.(((((.(...(((((..(((..((((((((((((((...)))))..))).))))))..)))..).))))....).))))).)))....................... ( -28.80, z-score = -1.21, R) >droSim1.chr3R 19045792 112 - 27517382 ----AUAUGUUUUGGUGCACUUCACUGUAUUUGGCUGAUGCGUCAGCACUUGACCCGCACUCAGCCCCAUCUGGUUGAGUCCCCU-CGGAUCGUCCUCAGCCUCCUCAUCCUCCAAC ----.......((((((((......))))...(((((((((....)))...((.(((.((((((((......)))))))).....-))).))....))))))..........)))). ( -30.40, z-score = -1.65, R) >droSec1.super_0 19590596 112 - 21120651 ----AUAUGUUUUGGUGCACUUCACUGGAUUUGGCUGAUGCGUCAGCACUUGACCCGCACUCAGCCCCAUCUAGUUGAGUCCCCU-CGGAUCAUCCUCAGCCUCCUCAUCCUCCAAC ----.........((.((((((.(((((((..((((((((((((((...)))))..))).))))))..))))))).)))).....-.((.....))...))..))............ ( -32.30, z-score = -2.32, R) >droYak2.chr3R 20107438 91 - 28832112 ----AUGUAUUUUGGUGCACUUCACUGGAUUUGGCUGAUGCGUCAGCACUUGACCCGUACUCAGAUCCCCCGGCUCCUCCUCCUGCUCCACCAUC---------------------- ----........(((((.........((((((((...(((.(((((...))))).)))..))))))))...(((..........))).)))))..---------------------- ( -20.90, z-score = -0.47, R) >droEre2.scaffold_4820 1647898 86 + 10470090 ----AUAUGUUUUGGUGCACUUCACUGGAUUUGGCUGAUGCGUCAGCACUUGACCCGCACUCAGCCCCAACUGGCUGAUCCUCCUCC--AUC------------------------- ----........(((......((((..(....((((((((((((((...)))))..))).))))))....)..).))).......))--)..------------------------- ( -22.32, z-score = -0.80, R) >droAna3.scaffold_13340 3370028 97 + 23697760 AUGUAUAUGUUGUGGUGCACUCCACCGGAUUUGGCUGAUGCGUCAGCACUUGACCCGCACUCAGCUCAGCCCCCGCCUCUUGCU--UCCAGCCUCCAGG------------------ ........((((.((.(((......(((..((((((((((((((((...)))))..))).))))).)))...))).....))).--)))))).......------------------ ( -23.60, z-score = 1.00, R) >consensus ____AUAUGUUUUGGUGCACUUCACUGGAUUUGGCUGAUGCGUCAGCACUUGACCCGCACUCAGCCCCAUCUGGUUGACUCCCCU_CGGAUCAUCCUCA__________________ ..........(((((((.....)))))))...((((((((((((((...)))))..))).))))))................................................... (-16.23 = -16.23 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:37:47 2011