| Sequence ID | dm3.chr3R |
|---|---|
| Location | 19,226,825 – 19,226,883 |
| Length | 58 |
| Max. P | 0.998743 |
| Location | 19,226,825 – 19,226,883 |
|---|---|
| Length | 58 |
| Sequences | 5 |
| Columns | 60 |
| Reading direction | forward |
| Mean pairwise identity | 65.14 |
| Shannon entropy | 0.62849 |
| G+C content | 0.30059 |
| Mean single sequence MFE | -12.06 |
| Consensus MFE | -6.42 |
| Energy contribution | -6.70 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.61 |
| Mean z-score | -2.40 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.47 |
| SVM RNA-class probability | 0.998743 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 19226825 58 + 27905053 AACUGAAGUUGUUAAAAUAAUAACGAUAGCAAGAAACUUU-AAGUUUCUCUGCACUAGU- .((((..(((((((......))))))).(((((((((...-..)))))).)))..))))- ( -13.90, z-score = -2.95, R) >droYak2.chr3R 20106742 59 + 28832112 CACAGAAGUUGUUAAAAUCAAUAUGAUUGCUAGAAACUUU-UGGUUUUUGUGUACCCAGC ..((((((((.(((.((((.....))))..))).))))))-))................. ( -10.60, z-score = -0.91, R) >droSec1.super_0 19589974 58 + 21120651 AACUGAGGUUGAUAAAUUAUUAACGAUUUCAAGAAACUUU-UAGUUUCUCUGCACUACU- ...((((((((.(((....))).))))))))((((((...-..))))))..........- ( -10.40, z-score = -1.96, R) >droSim1.chr3R 19045155 58 + 27517382 AACUGAAGUUGUUAAAAUAUUAACGAUUGCAAGAAACUUU-UAGUUUCUCUGCACUAUU- ......(((((((((....)))))))))(((((((((...-..)))))).)))......- ( -14.10, z-score = -3.47, R) >droGri2.scaffold_15074 6971707 53 - 7742996 ------AGUUUCCAAACUUAUAAUAACUGAUGAAAGCUAAACUGAUUUUCGUCAGGAAU- ------....................(((((((((((......).))))))))))....- ( -11.30, z-score = -2.71, R) >consensus AACUGAAGUUGUUAAAAUAAUAACGAUUGCAAGAAACUUU_UAGUUUCUCUGCACUAAU_ ......((((((((......))))))))((((((((((....))))))).)))....... ( -6.42 = -6.70 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:37:47 2011