| Sequence ID | dm3.chr3R |
|---|---|
| Location | 19,223,204 – 19,223,324 |
| Length | 120 |
| Max. P | 0.500000 |
| Location | 19,223,204 – 19,223,324 |
|---|---|
| Length | 120 |
| Sequences | 12 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 96.97 |
| Shannon entropy | 0.06189 |
| G+C content | 0.37014 |
| Mean single sequence MFE | -28.42 |
| Consensus MFE | -23.90 |
| Energy contribution | -23.72 |
| Covariance contribution | -0.18 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.79 |
| Structure conservation index | 0.84 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chr3R 19223204 120 + 27905053 AAAAUAAUUGUAAAUCGCUAGAUUUAUGACCAAAAACAUGGCCACGAAUUAUGACGCCGGCCACAGGUGGAAAUCGCAUGCUGAUUUCAACUUGAUUUGCUUGCCAUAUAAUUGCAAAUU .......(..((((((....))))))..).........(((((.((........))..)))))(((((.(((((((.....))))))).)))))((((((.............)))))). ( -29.42, z-score = -1.84, R) >droSim1.chr3R 19041588 120 + 27517382 AAAAUAAUUGUAAAUCGCUAGAUUUAUGACCGAAAACAUGGCCACGAAUUAUGACGCCGGCCACAGGUGGAAAUCGCAUGCUGAUUUCAACUUGAUUUGCUUGCCAUAUAAUUGCAAAUU .......(..((((((....))))))..).........(((((.((........))..)))))(((((.(((((((.....))))))).)))))((((((.............)))))). ( -29.42, z-score = -1.74, R) >droSec1.super_0 19586470 120 + 21120651 AAAAUAAUUGUAAAUCGCUAGAUUUAUGACCGAAAACAUGGCCACGAAUUAUGACGCCGGCCACAGGUGGAAAUCGCAUGCUGAUUUCAACUUGAUUUGCUUGCCAUAUAAUUGCAAAUU .......(..((((((....))))))..).........(((((.((........))..)))))(((((.(((((((.....))))))).)))))((((((.............)))))). ( -29.42, z-score = -1.74, R) >droYak2.chr3R 20103046 120 + 28832112 AAAAUAAUUGUAAAUCGCUAGAUUUAUGACCGAAAACAUGGCCACGAAUUAUGACGCCGGCCACAGGUGGAAAUCGCAUGCUGAUUUCAACUUGAUUUGCUUGCCAUAUAAUUGCAAAUU .......(..((((((....))))))..).........(((((.((........))..)))))(((((.(((((((.....))))))).)))))((((((.............)))))). ( -29.42, z-score = -1.74, R) >droEre2.scaffold_4820 1643636 120 - 10470090 AAAAUAAUUGUAAAUCGCUAGAUUUAUGACCGAAAACAUGGCCACGAAUUAUGACGCCGGCCACAGGUGGAAAUCGCAUGCUGAUUUCAACUUGAUUUGCUUGCCAUAUAAUUGCAAAUU .......(..((((((....))))))..).........(((((.((........))..)))))(((((.(((((((.....))))))).)))))((((((.............)))))). ( -29.42, z-score = -1.74, R) >droAna3.scaffold_13340 3365783 120 - 23697760 AAAAUAAUUGUAAAUCGCUAGAUUUAUGACCAAAAACACAGCCACGAAUUAUGACGCUGGCCACAGGUGGAAAUCGCAUGCUGAUUUCAACUUGAUUUGCUUGCCAUAUAAUUGCAAAUU .......(..((((((....))))))..)...........((((((........)).))))..(((((.(((((((.....))))))).)))))((((((.............)))))). ( -26.92, z-score = -1.54, R) >dp4.chr2 2704412 120 + 30794189 AAAAUAAUUGUAAAUCGCUAGAUUUAUGACCAAAAACAUAGCCACGAAUUAUGACGCCGGCCACAGGUGGAAAUCGCAUGCUGAUUUCAACUUGAUUUGCUUGCCAUAUAAUUGCAAAUU .......(..((((((....))))))..)...........((....(((((((..((.(((..(((((.(((((((.....))))))).)))))....))).))..)))))))))..... ( -25.10, z-score = -0.93, R) >droPer1.super_7 2797587 120 - 4445127 AAAAUAAUUGUAAAUCGCUAGAUUUAUGACCAAAAACAUAGCCACGAAUUAUGACGCCGGCCACAGGUGGAAAUCGCAUGCUGAUUUCAACUUGAUUUGCUUGCCAUAUAAUUGCAAAUU .......(..((((((....))))))..)...........((....(((((((..((.(((..(((((.(((((((.....))))))).)))))....))).))..)))))))))..... ( -25.10, z-score = -0.93, R) >droWil1.scaffold_181130 7403701 120 - 16660200 AAAAUAAUUGUAAAUCGCUAGAUUUAUGACCAAAAACACAAGCACGAAUUAUGACGCCGGCCACAGGUGGAAAUCGCAUGCUGAUUUCUACUUGAUUUGCUUGCCAUAUAAUUGCAAAUU .......(..((((((....))))))..)............(((...((((((..((.(((..(((((((((((((.....)))))))))))))....))).))..)))))))))..... ( -30.40, z-score = -2.82, R) >droGri2.scaffold_15074 6968216 120 - 7742996 AAAAUAAUUGUAAAUCGUUAGAUUUAUGACCAAAAACAUAGCCACGAAUUAUGACGCCGAUCACAGGUGGAAAUCGCAUGCUGAUUUCUACUUGAUUUGCUUGCCAUAUAAUUGCAAAUU .......(..((((((....))))))..).......(((((.......)))))..((.(((((..(((((((((((.....)))))))))))))))).))((((.........))))... ( -26.10, z-score = -1.84, R) >droVir3.scaffold_13047 8855764 120 + 19223366 AAAAUAAUUGUAAAUCGUUAGAUUUAUGGCCAAAAACACAGCCACGAAUUAUGACGCCGGUCACAGGUGGAAAUCGCAUGCUGAUUUCUACUUGAUUUGCUUGCCAUAUAAUUGCAAAUU .......((((((...((((((((..((((..........))))..)))).))))((.(((..(((((((((((((.....)))))))))))))....))).)).......))))))... ( -32.30, z-score = -2.72, R) >droMoj3.scaffold_6540 2325783 120 - 34148556 AAAAUAAUUGUAAAUCGUUAGAUUUAUGACCAAAAACACAGCCACGAAUUAUGACGCCGGUCACAGGUGGAAAUCGCAUGCUGAUUUCUACUUGAUUUGCUUGCCAUAUAAUUGCAAAUU .......(..((((((....))))))..)......................((((....))))(((((((((((((.....)))))))))))))((((((.............)))))). ( -28.02, z-score = -1.94, R) >consensus AAAAUAAUUGUAAAUCGCUAGAUUUAUGACCAAAAACAUAGCCACGAAUUAUGACGCCGGCCACAGGUGGAAAUCGCAUGCUGAUUUCAACUUGAUUUGCUUGCCAUAUAAUUGCAAAUU .......(..((((((....))))))..).................(((((((..((.(((..(((((.(((((((.....))))))).)))))....))).))..)))))))....... (-23.90 = -23.72 + -0.18)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:37:45 2011