| Sequence ID | dm3.chr3R |
|---|---|
| Location | 19,221,648 – 19,221,747 |
| Length | 99 |
| Max. P | 0.616995 |
| Location | 19,221,648 – 19,221,747 |
|---|---|
| Length | 99 |
| Sequences | 4 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 51.79 |
| Shannon entropy | 0.78033 |
| G+C content | 0.41779 |
| Mean single sequence MFE | -18.47 |
| Consensus MFE | -7.62 |
| Energy contribution | -6.38 |
| Covariance contribution | -1.25 |
| Combinations/Pair | 1.50 |
| Mean z-score | -0.67 |
| Structure conservation index | 0.41 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.616995 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 19221648 99 + 27905053 CCAAACUCCCAGAAAUUUCACUUUCUUCACAAUGUAUUAUUAUUUAAUGAAUGCAAGAUGCAAUUAUUGCCCUCAGUGUUUCAUAAGUGACUGGGCUAG .......(((((.....((((((....(((..(((((((((....)))).))))).((.(((.....)))..)).)))......))))))))))).... ( -19.50, z-score = -1.44, R) >droEre2.scaffold_4820 1641884 99 - 10470090 CAAAACUCCCAGAAAUUUCACUAGCUUGCCAUUUGAUUAUUACUCAAUUAAUGCAAUAUGCAAUUAUUGCCCUCAGUGCUUCAUAAGUGACUGGGCUAG .......(((((.....(((((((((((....((((.......)))).....((((((......))))))...))).))).....)))))))))).... ( -18.40, z-score = -0.78, R) >droYak2.chr3R 20101420 82 + 28832112 -----------------CAAAACACACAGAAAUUGGUUAUUACUUAAUUAAUGCAAUUUGUAAUUAUUGCCCUCAGUGUGUCAUAAGUGACUGGGCUAG -----------------........(((((.((((((((.....))))))))....))))).......((((.......((((....)))).))))... ( -14.70, z-score = -0.12, R) >droVir3.scaffold_13047 8854562 83 + 19223366 ---------CGGAGAUCGAUAGAAGUCAGGCCCAGAGCCAGAGCCAG--AGCUGGAGACCUAGUGCCCGUGCCAAGUGCU-----AGUUGCAGUCCCAG ---------.((...(((((....))).(((.....))).)).))..--..((((.(((((((..(.........)..))-----)).....))))))) ( -21.30, z-score = -0.33, R) >consensus _________CAGAAAUUUAAAUAACUCAGCAAUUGAUUAUUACUCAAUUAAUGCAAGAUGCAAUUAUUGCCCUCAGUGCUUCAUAAGUGACUGGGCUAG ...................................................((((...))))......(((((((.(........).)))..))))... ( -7.62 = -6.38 + -1.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:37:44 2011