| Sequence ID | dm3.chr3R |
|---|---|
| Location | 19,219,224 – 19,219,342 |
| Length | 118 |
| Max. P | 0.614050 |
| Location | 19,219,224 – 19,219,342 |
|---|---|
| Length | 118 |
| Sequences | 10 |
| Columns | 134 |
| Reading direction | reverse |
| Mean pairwise identity | 71.76 |
| Shannon entropy | 0.58233 |
| G+C content | 0.48009 |
| Mean single sequence MFE | -35.29 |
| Consensus MFE | -14.49 |
| Energy contribution | -15.62 |
| Covariance contribution | 1.13 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.42 |
| Structure conservation index | 0.41 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.614050 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 19219224 118 - 27905053 CUGUGCAGAGCGGAUCAGCAAUAUAGAGCUUAUAGUAAAACUGUAACGAAACCCGAUUGAACCCGCCAUGGGUGGCGGUGGAUUU--------GCUUUGGCUUUUGCCAAAGCCA-UAGCAACAAC-A------ .(((((((((((((((..((((......(((((((.....)))))).).......))))..(((((((....)))))).))))))--------)))))((((((....)))))).-..)).)))..-.------ ( -37.92, z-score = -1.91, R) >droSim1.chr3R 19037730 118 - 27517382 CUGUGCAGAGCGGAUCAGCAAUAUAGAGCUUAUAGUAAAACUGUAACGAAACCCGAUUGAACCCGCCAUGGGUGGCGGUGGAUUU--------GCUUUGGCUUUUGCCAAAGCCA-UGGCAACAAC-A------ .(((((((((((((((..((((......(((((((.....)))))).).......))))..(((((((....)))))).))))))--------)))))((((((....)))))).-..)).)))..-.------ ( -37.72, z-score = -1.47, R) >droSec1.super_0 19582671 118 - 21120651 CAGUGCAGAGCGGAUCAGCAAUAUAGAGCUUAUAGUAAAACUGUAACGAAACCCGAUUGAACCCGCCAUGGGUGGCGGUGGAUUU--------GCUUUGGCUUUUGCCAAAGCCA-UGGCAACAAC-A------ .(((.(((((((((((..((((......(((((((.....)))))).).......))))..(((((((....)))))).))))))--------))))))))).((((((......-))))))....-.------ ( -38.12, z-score = -1.68, R) >droEre2.scaffold_4820 1639464 115 + 10470090 CGGUGC--AGCGGAUCAGCAAUAUAGAGCUUAUAGUAAAACUGUAACGAAACCCGAUUGAACCCGCCAUGGGUGGCGGUGGAUUU--------GCUUUGGCU-UGGCCAAAGCCA-UAGCCACAAC-A------ .(((.(--(((((...(((........)))(((((.....))))).......))).))).)))(((((....)))))((((....--------((((((((.-..))))))))..-...))))...-.------ ( -39.00, z-score = -1.67, R) >droAna3.scaffold_13340 3362109 124 + 23697760 ---------GCGGAUCAACAAUAUAGAGCUUAUAGUAAAACUGUAACGAAACCCGAUUGAACCCGCCAUGGGUGGCGGUGGUACAGCAACAGAGCCAUAGCUACAGCAAUAGGCACUAGCAAUAGC-AACAGCG ---------((............(((.((((((.((....(((((.((.....))......(((((((....)))))).).)))))......(((....)))...)).)))))).)))((....))-....)). ( -29.70, z-score = -0.16, R) >dp4.chr2 2701084 115 - 30794189 ----------CAGAUAGACAAUGUAGAGCUUAUAGUAAAACUGUAACGAAACCCGAUUGAACCCGCCAUGGGUGGCGGUGGCUUU-------GGCUUUGGCUGUGCCUUUUGCCA-GAGCCACAAA-UAUAACA ----------........((((.......((((((.....))))))((.....))))))....(((((....)))))((((((((-------(((...(((...)))....))))-)))))))...-....... ( -37.70, z-score = -2.42, R) >droPer1.super_7 2794224 115 + 4445127 ----------CAGAUAGACAAUGUAGAGCUUAUAGUAAAACUGUAACGAAACCCGAUUGAACCCGCCAUGGGUGGCGGUGGCUUU-------GGCUUUGGCUGUGCCUUUUGCCA-GAGCCACAAA-UAUAACA ----------........((((.......((((((.....))))))((.....))))))....(((((....)))))((((((((-------(((...(((...)))....))))-)))))))...-....... ( -37.70, z-score = -2.42, R) >droYak2.chr3R 20098959 107 - 28832112 CUGUGC--AGCGGAUCAACAAUAUAGAGCUUAUAGUAAAACUGUAACGAAACCCGAUUGAACCCGCCAUGGGUGGCGGUGGAUUU--------GCUUUGGCUCUGGCCAAAGCCA-UA---------------- .((.((--.(((((((..((((......(((((((.....)))))).).......))))..(((((((....)))))).))))))--------))((((((....))))))))))-..---------------- ( -34.32, z-score = -1.63, R) >droWil1.scaffold_181130 9253373 100 - 16660200 ------------------CAAUAUAGAGUUUAUAGUAAAACUGUAACGAAACCCGAUUGAACCCGCCAUGGGUGGC-UUUGCUUU-------UUUUUUUUUUUUUUGGUUUGCUA-GGCCAGCAAC-U------ ------------------((((.((.(((((......))))).)).((.....)))))).((((.....))))(((-((.((...-------...................)).)-))))......-.------ ( -17.45, z-score = 1.01, R) >droVir3.scaffold_13047 8852814 127 - 19223366 -CAGUACGGACCGUUCAACAAUGU--UGCCCAUAGUAAAACUGUAACGAAACCCGAUUGAACCCGCCAUGGGUGGC-UCGACUUG---CCAGGGCCCAGAGCGGCGAGCGAGACGGCAACAUUGCCGAACAGCA -...........((((..((((((--((((.((((.....))))............(((..(((((..((((((((-.......)---))...)))))..)))).)..)))...))))))))))..)))).... ( -43.30, z-score = -1.78, R) >consensus __GUGC__AGCGGAUCAACAAUAUAGAGCUUAUAGUAAAACUGUAACGAAACCCGAUUGAACCCGCCAUGGGUGGCGGUGGAUUU________GCUUUGGCUUUGGCCAAAGCCA_UAGCAACAAC_A______ .......................((((((((((((.....))))))................((((((....))))))...............))))))................................... (-14.49 = -15.62 + 1.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:37:43 2011