| Sequence ID | dm3.chr3R |
|---|---|
| Location | 19,218,032 – 19,218,088 |
| Length | 56 |
| Max. P | 0.824154 |
| Location | 19,218,032 – 19,218,088 |
|---|---|
| Length | 56 |
| Sequences | 7 |
| Columns | 61 |
| Reading direction | forward |
| Mean pairwise identity | 71.53 |
| Shannon entropy | 0.57166 |
| G+C content | 0.60818 |
| Mean single sequence MFE | -17.99 |
| Consensus MFE | -11.45 |
| Energy contribution | -10.86 |
| Covariance contribution | -0.59 |
| Combinations/Pair | 1.83 |
| Mean z-score | -0.78 |
| Structure conservation index | 0.64 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.81 |
| SVM RNA-class probability | 0.824154 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 19218032 56 + 27905053 CGGCCGCCGCAUCGAUGGCGGUGCUC----CAUCUAC-AAGGAGAACCGGAGACAAGUGGC .....(((((.........(((.(((----(......-..)))).)))(....)..))))) ( -20.10, z-score = -1.17, R) >droSim1.chr3R 19036589 56 + 27517382 CGGCCACCGCAUCGAUGGCGGUGCUC----CAUCUAC-AAGGAGAACCGGAGACAAGUGGC ..(((((.((.......))(((.(((----(......-..)))).)))(....)..))))) ( -19.80, z-score = -1.54, R) >droSec1.super_0 19581528 56 + 21120651 CGGCCGCCGCAUCGAUGGCGGUGCUC----CAUCUAC-AAGGAGAACCGGAGACAAGUGGC .....(((((.........(((.(((----(......-..)))).)))(....)..))))) ( -20.10, z-score = -1.17, R) >droYak2.chr3R 20097703 56 + 28832112 CGGCCGCCGCAUCGAUGGCGGUGCUC----CGACUAC-AAGGAGAACCGGAGACAAGUGGC .....(((((.........(((.(((----(......-..)))).)))(....)..))))) ( -20.80, z-score = -1.33, R) >droEre2.scaffold_4820 1638333 56 - 10470090 CGGCCGCCGCAUCGAUGGCGGUGCUC----CAUCUAC-AAGGAGAAGCGGAGACAAGUGGC ..(((((((......))))))).(((----(......-..))))....(....)....... ( -18.40, z-score = -0.48, R) >droAna3.scaffold_13340 3361011 60 - 23697760 CUGCUGAGGCAUCGAUGGUGGUUCUUGGAUCCCCAAA-AAGAGGAAAGGGAAACAGGCAGU ((((((((.(((.....))).))).((..((((....-.........))))..))))))). ( -16.72, z-score = -0.77, R) >droWil1.scaffold_181130 9252331 57 + 16660200 ---CUGCGCUAUCGACCCCAAAAGACAAGUGUUCUAGGAAGCACAAGCGGCGGUAUAUGC- ---(((((((.((..........))...(((((......))))).))).)))).......- ( -10.00, z-score = 0.99, R) >consensus CGGCCGCCGCAUCGAUGGCGGUGCUC____CAUCUAC_AAGGAGAACCGGAGACAAGUGGC ..(((((.((((((....))))))........................(....)..))))) (-11.45 = -10.86 + -0.59)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:37:42 2011