| Sequence ID | dm3.chr3R |
|---|---|
| Location | 19,202,108 – 19,202,201 |
| Length | 93 |
| Max. P | 0.913581 |
| Location | 19,202,108 – 19,202,201 |
|---|---|
| Length | 93 |
| Sequences | 7 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 60.85 |
| Shannon entropy | 0.68094 |
| G+C content | 0.34567 |
| Mean single sequence MFE | -13.64 |
| Consensus MFE | -7.05 |
| Energy contribution | -6.64 |
| Covariance contribution | -0.41 |
| Combinations/Pair | 1.20 |
| Mean z-score | -0.94 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.23 |
| SVM RNA-class probability | 0.913581 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 19202108 93 + 27905053 AGGUAG-UAUUCUACGUACAAACAUACAUAUGUAAAUCAAGUCAAAAUGAAAGCUA------UAACAACGAGGCCUGGCCUCAAACGAAAA---C-ACAUUUUA ..((((-(.(((...((....)).(((....)))..............))).))))------)......(((((...))))).........---.-........ ( -13.00, z-score = -0.44, R) >droSim1.chr3R 19020972 86 + 27517382 AGGUAG-UAUUCUACG--------UACUUAUGUAAAUCAAGUCAAAAUGAAAGCUA------UAACAACGAGGCCUGGCCUCAAACAAAAA---ACACAUUUUA ..((((-(.(((....--------.((((((....)).))))......))).))))------)......(((((...))))).........---.......... ( -13.50, z-score = -0.90, R) >droSec1.super_0 19566051 84 + 21120651 AGGUAG-UAUUCUACG--------UACAUAUGUAAAUCAAGUCAAAAUGAAAGCUA------UAACAACGAGGCCUGGCCUCAAACAAAAA-----ACAUUUUA ..((((-(....((((--------(....)))))..(((........)))..))))------)......(((((...))))).........-----........ ( -12.70, z-score = -0.86, R) >droEre2.scaffold_4820 1622301 84 - 10470090 AGAUAGGUAUUCUACG----------------UAAAUCAAGUCAAAAUGAUAGCUAGUUGUAUAACAACGAGGCCUGGCCUCAAACGAAAA---C-AAAUUUUA ......((.(((....----------------...((((........)))).....((((.....))))(((((...)))))....))).)---)-........ ( -13.70, z-score = -0.65, R) >droAna3.scaffold_13340 3345190 88 - 23697760 ----AAAUACCCUAUU---------ACAUACAUCAAAUGAGUCAAAAGAAUGGCU---AUAACAACAACGAGGCCUGGCCUCAAAUCAAAACUAACAGGGUUUA ----....(((((.((---------(.............(((((......)))))---...........(((((...)))))..........))).)))))... ( -17.90, z-score = -2.49, R) >dp4.chr2 2683250 79 + 30794189 --------------AG---------GAAAACUUCAACUCAAGAGAAUGAUUGAGAGG-AUAACAACAACAAGGCCUGGCCUUAAACCAAAA-UAAAAUGUUUUA --------------.(---------(......((..(((((........)))))..)-)..........(((((...)))))...))....-............ ( -12.40, z-score = -0.77, R) >droPer1.super_7 2776080 79 - 4445127 --------------AG---------GAAAACUUCAACUCAAGAGAAUGAUUGAGAGG-AUAACAACAACAAGGCCUGGCCUUAAACCCAAA-UAAAAUGUUUUA --------------..---------.(((((.((..(((((........)))))..)-)..........(((((...))))).........-......))))). ( -12.30, z-score = -0.46, R) >consensus AG_UAG_UAUUCUACG_________ACAUACGUAAAUCAAGUCAAAAUGAUAGCUA_____AUAACAACGAGGCCUGGCCUCAAACCAAAA___A_ACAUUUUA .....................................................................(((((...)))))...................... ( -7.05 = -6.64 + -0.41)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:37:39 2011