| Sequence ID | dm3.chr3R |
|---|---|
| Location | 19,193,810 – 19,193,912 |
| Length | 102 |
| Max. P | 0.818327 |
| Location | 19,193,810 – 19,193,912 |
|---|---|
| Length | 102 |
| Sequences | 11 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 79.99 |
| Shannon entropy | 0.42595 |
| G+C content | 0.49269 |
| Mean single sequence MFE | -32.39 |
| Consensus MFE | -17.68 |
| Energy contribution | -18.59 |
| Covariance contribution | 0.91 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.82 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.79 |
| SVM RNA-class probability | 0.818327 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 19193810 102 + 27905053 UGGCGAAAAAUGUGCGCGCUAUAAAUUUAUGUUGGCAACAUCAAAUCGACGUAAAUUACGCGACGCCUGGUU----ACCAGGCU-GCCAGUUAGCCUGGCCAGGCGG ..............((((.....((((((((((((..........)))))))))))).)))).(((((((..----.(((((((-(.....))))))))))))))). ( -39.80, z-score = -2.87, R) >droSim1.chr3R 19012635 106 + 27517382 UGGCGAAAAAUGUGCGCGCUAUAAAUUUAUGUUGGCAACAUCAAAUCGACGUAAAUUACGCGACGCCUGGUUACCAACCAGGCU-GCCAGUUAGCCUGGCCAGGCGG (((((......((.((((.....((((((((((((..........)))))))))))).))))))(((((((.....))))))))-))))....((((....)))).. ( -39.10, z-score = -2.45, R) >droSec1.super_0 19557947 106 + 21120651 UGGCGAAAAAUGUUCGCGCUAUAAAUUUAUGUUGGCAACAUCAAAUCGACGUAAAUUACGCGACGCCUGGUUACCAACCAGACU-GCCAGUUAGCCUGGCCAGGCGG ..(((((.....)))))((....((((((((((((..........))))))))))))..))..(((((((((........))).-(((((.....))))))))))). ( -33.90, z-score = -1.98, R) >droYak2.chr3R 20072719 103 + 28832112 UGGCGAAAAAUGUGCGCGCUAUAAAUUUAUGUUGGCAACAUCAAAUCGACGUAAAUUACGCGACGCCUGGUUU---ACCAGGCU-GCCAGUUAGCCUGGCCAGGCGG ..............((((.....((((((((((((..........)))))))))))).)))).(((((((...---.(((((((-(.....))))))))))))))). ( -39.40, z-score = -2.75, R) >droEre2.scaffold_4820 1611952 102 - 10470090 UGGCGAAAAAUGUGCGCGCUAUAAAUUUAUGUUGGCAACAUCAAAUCGACGUAAAUUACGCGACGCCUGGUU----ACCAGGCU-GCCAGUUAGCCCGGCCAGGCGG ..............((((.....((((((((((((..........)))))))))))).)))).(((((((..----.((.((((-(.....))))).))))))))). ( -35.20, z-score = -1.31, R) >droAna3.scaffold_13340 3337581 95 - 23697760 --GCGAAAAAUGUGCGCGCGAUAAAUUUAUGUUGGCAACAUCAAAUCGACGUAAAUUACGCGACGCCUGGUU----ACCAGGCU-GCCAGUUAUCCAGGCGG----- --(((.......))).((((...((((((((((((..........)))))))))))).)))).(((((((..----((..((..-.)).))...))))))).----- ( -29.40, z-score = -1.21, R) >droPer1.super_7 2747119 89 - 4445127 UGGCGAAAAAUGUGCGCGCGAUAAAUUUAUGUUGGCAACAUCAAAUCGACGUAAAUUACGCGACGCCUGGUU----ACCAGGCU-GCCAGGCGG------------- (((((..........(((((...((((((((((((..........)))))))))))).)))).)((((((..----.)))))))-)))).....------------- ( -30.60, z-score = -1.82, R) >dp4.chr2 28133350 89 - 30794189 UGGCGAAAAAUGUGCGCGCGAUAAAUUUAUGUUGGCAACAUCAAAUCGACGUAAAUUACGCGACGCCUGGUU----ACCAGGCU-GCCAGGCGG------------- (((((..........(((((...((((((((((((..........)))))))))))).)))).)((((((..----.)))))))-)))).....------------- ( -30.60, z-score = -1.82, R) >droMoj3.scaffold_6540 2294994 95 - 34148556 UGGC-AAAAUUGUGUGCGCUAUAAAUUUAUGUUGGAAACAUCAAAUCGACGUAAAUUACGCGCCGCCUGACUGCCACACA-----CUCAACUAGCA--GGCGG---- ..((-(......)))((((....((((((((((((..........))))))))))))..))))((((((.(((.......-----......)))))--)))).---- ( -25.02, z-score = -1.19, R) >droVir3.scaffold_13047 8827487 106 + 19223366 UGGU-AAAAAUGUGCGCGCUAUAAAUUUAUGUUGGAAACAUCAAAUCGACGUAAAUUACGCGCCGCCUGACUGCCACAAAGUCGCUUCAACUAGCACUGGCAGGCGG ....-......(((.((((....((((((((((((..........))))))))))))..)))))))(((.((((((....((.(((......))))))))))).))) ( -31.00, z-score = -1.47, R) >droGri2.scaffold_15074 6940312 81 - 7742996 UGGU-AAAAAUGUGCGCGCUAUAAAUUUAUGUUGGAAACAUCAAAUCGACGUAAAUUACGCG---CCAGAGUUGCUGGCAGGCG-G--------------------- ....-.........(((((....((((((((((((..........))))))))))))..))(---((((.....)))))..)))-.--------------------- ( -22.30, z-score = -1.10, R) >consensus UGGCGAAAAAUGUGCGCGCUAUAAAUUUAUGUUGGCAACAUCAAAUCGACGUAAAUUACGCGACGCCUGGUU____ACCAGGCU_GCCAGUUAGCC_GGCCAGGCGG ((((.........((((((....((((((((((((..........))))))))))))..))).)))(((.........)))....)))).................. (-17.68 = -18.59 + 0.91)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:37:38 2011