| Sequence ID | dm3.chr3R |
|---|---|
| Location | 19,166,951 – 19,167,043 |
| Length | 92 |
| Max. P | 0.835087 |
| Location | 19,166,951 – 19,167,043 |
|---|---|
| Length | 92 |
| Sequences | 3 |
| Columns | 92 |
| Reading direction | forward |
| Mean pairwise identity | 90.22 |
| Shannon entropy | 0.13701 |
| G+C content | 0.29710 |
| Mean single sequence MFE | -14.97 |
| Consensus MFE | -13.29 |
| Energy contribution | -13.41 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.89 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.85 |
| SVM RNA-class probability | 0.835087 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 19166951 92 + 27905053 UAUAGCUUGAACUAUAUUCGAUAGUUUCUUAAAUUGCAUGUAGCAUUAAAAGAAAUUACUUGAAUGCAAACCAUAUUCAAAUCCGAAGCGUA (((((......)))))((((.(((((((((....(((.....)))....))))))))).(((((((.......)))))))...))))..... ( -16.90, z-score = -1.61, R) >droSec1.super_0 19531139 92 + 21120651 UAUAGCUUGAACUAUAUUCGAUAGUUUCUUGAAUUGCAUGUUGUACUAAAAGAAAUUUCUCGAAUACAAACCACAUUCAAAUCCAAAGCGAA ....((((......(((((((.((((((((....(((.....)))....))))))))..)))))))...................))))... ( -15.11, z-score = -1.63, R) >droSim1.chr3R 18984038 92 + 27517382 UAUAGCUUAAACUAUAUUCCAUAGUUUCUUGAAUUGCACGUUGUACUAAAAGAAAUUACUAGAAUACAAACCACAUUCAAAUCCAAAGCGAA ....(((((((((((.....))))))).((((((((....((((((((.((....))..)))..)))))..)).)))))).....))))... ( -12.90, z-score = -1.95, R) >consensus UAUAGCUUGAACUAUAUUCGAUAGUUUCUUGAAUUGCAUGUUGUACUAAAAGAAAUUACUAGAAUACAAACCACAUUCAAAUCCAAAGCGAA ....((((......((((((((((((((((....(((.....)))....))))))))).)))))))...................))))... (-13.29 = -13.41 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:37:35 2011