| Sequence ID | dm3.chr3R |
|---|---|
| Location | 19,138,433 – 19,138,504 |
| Length | 71 |
| Max. P | 0.500000 |
| Location | 19,138,433 – 19,138,504 |
|---|---|
| Length | 71 |
| Sequences | 7 |
| Columns | 77 |
| Reading direction | reverse |
| Mean pairwise identity | 73.60 |
| Shannon entropy | 0.46252 |
| G+C content | 0.48833 |
| Mean single sequence MFE | -17.43 |
| Consensus MFE | -8.24 |
| Energy contribution | -8.04 |
| Covariance contribution | -0.20 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.59 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chr3R 19138433 71 - 27905053 ------CAAAGCCAACCGUGGCAAACCCAAAACGGAAGCCUGUCUAACAAAGUCAAGGAGUCCGUCAUGAUGGUUGG ------.....((((((((((....))((..(((((..((((.((.....)).).)))..)))))..)))))))))) ( -23.80, z-score = -3.15, R) >droSim1.chr3R 18955345 61 - 27517382 ----------------CAAGGCAAACCCAAAACGGAAGCCUGUCUAACAAAGUCAAGGAGUCCGUCAUGAUGGUUGG ----------------.......((((((..(((((..((((.((.....)).).)))..)))))..))..)))).. ( -16.10, z-score = -1.57, R) >droSec1.super_0 19503131 61 - 21120651 ----------------CAAGGCAAACCCAAAACGGAAGCCUGUCUAACAAAGUCAAGGAGUCCGUCAUGAUGGUUGG ----------------.......((((((..(((((..((((.((.....)).).)))..)))))..))..)))).. ( -16.10, z-score = -1.57, R) >droYak2.chr3R 20015206 77 - 28832112 CAAAAUCGAGGCAAACUGAGGUAAACCCAAAACGGAAGCCUGUCUAACAAAGUCAAGGAGUCCAUCAUGGUGGCUGG ......(.((.((...(((((....))......(((..((((.((.....)).).)))..))).)))...)).)).) ( -15.80, z-score = 0.12, R) >droEre2.scaffold_4820 1554867 72 + 10470090 -----CAAGAGCCAGCCGAGGCAAACCCAAAACGGAAGCCUGUCUAACAAAGUCAAGGAGUCCAUCAUGAUGGCUGG -----......(((((((.((.....)).....(((..((((.((.....)).).)))..))).......))))))) ( -21.70, z-score = -2.05, R) >dp4.chr2 21299109 62 + 30794189 ---------------CAAAAGACACUCAAAAACGGAUGUCUGUCUAACAAAGUCAAGGGGUUUGACAUUGGGGUGGG ---------------.......(((((....((((....))))....(((.((((((...)))))).)))))))).. ( -14.60, z-score = -1.64, R) >droPer1.super_0 10984430 62 - 11822988 ---------------CAAAAGACACUCAAAAACGGAUGUCUGUCUAACAAAGUCAAGGGGUUGGACAUUGGGGUGGG ---------------(((.(((((..(......)..)))))(((((((...........))))))).)))....... ( -13.90, z-score = -1.31, R) >consensus _______________CCAAGGCAAACCCAAAACGGAAGCCUGUCUAACAAAGUCAAGGAGUCCGUCAUGAUGGUUGG ...........................((..(((((..((((.((.....)).).)))..)))))..))........ ( -8.24 = -8.04 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:37:32 2011