| Sequence ID | dm3.chr3R |
|---|---|
| Location | 19,137,229 – 19,137,320 |
| Length | 91 |
| Max. P | 0.647389 |
| Location | 19,137,229 – 19,137,320 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 94 |
| Reading direction | forward |
| Mean pairwise identity | 73.67 |
| Shannon entropy | 0.50375 |
| G+C content | 0.35928 |
| Mean single sequence MFE | -16.80 |
| Consensus MFE | -8.14 |
| Energy contribution | -8.28 |
| Covariance contribution | 0.14 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.49 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.33 |
| SVM RNA-class probability | 0.647389 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 19137229 91 + 27905053 UUUUAGUUUGCAAAACCAAGCCCCCC--AUCAUAUCUUUAUAGGUCAUGCAUCUGUAAAGUUUAUGGUUUU-CCAGUUCUAGGAAAUUUCAAUG .....(((((......))))).....--((((((.((((((((((.....))))))))))..))))))(((-((.......)))))........ ( -18.20, z-score = -2.46, R) >droSim1.chr3R 18954097 91 + 27517382 UUUAAGUUUGCAAAGCCAAGCCCCUC--AUCAUAUCUUUAUAGGUCAUGCAUCUGUAAAGUUUAUGGUUUU-GCAGUUCUAGGAAAUUUCAAUG ((..((.(((((((((((........--.......((((((((((.....))))))))))....)))))))-))))..))..)).......... ( -20.11, z-score = -2.20, R) >droSec1.super_0 19501893 91 + 21120651 UUUAAGUUUGCAAAACCAAGCCCCUC--AUCAUAUCUUUAUAGGUCAUGCAUCUGUAAAGUUUAUGGUUUU-GCAAUUCUAAGAAAUUUCAAUG ....((.(((((((((((........--.......((((((((((.....))))))))))....)))))))-))))..)).............. ( -20.31, z-score = -3.40, R) >droYak2.chr3R 20013859 93 + 28832112 UUUUAUUUUGCAAAACCAAGCCCCCCCCAUCAUAUCUUUAUAGGUCAUGCAUCUGUAAAGUUUAUGGCUUC-GCAGUUCUAGGAAAUUUCAAUG (((((..((((......(((((.........(((.((((((((((.....))))))))))..)))))))).-))))...))))).......... ( -13.60, z-score = -0.24, R) >droEre2.scaffold_4820 1553758 94 - 10470090 UUUUAUUUUGCAACCCAACCCCCGCGCCAUCAUAUCUUUGUAGGUCAUGCAUCUGUAAAGUUUAUGGCUUUCGCAGUUCUGCGAAAUUUCAAUG .........................(((((.....((((((((((.....))))))))))...)))))(((((((....)))))))........ ( -20.10, z-score = -2.01, R) >droAna3.scaffold_13340 15449645 73 - 23697760 ----------------CUUCGGGCUGAAAUUGUAUCUUUAUUGUUC---CAUUCGUAGA-UUGAUUAUUUU-CGGAUCGUGAUCAACAUUUAUG ----------------((.((((..(((...(((....)))..)))---..)))).)).-((((((((...-......))))))))........ ( -8.50, z-score = 1.33, R) >consensus UUUUAGUUUGCAAAACCAAGCCCCCC__AUCAUAUCUUUAUAGGUCAUGCAUCUGUAAAGUUUAUGGUUUU_GCAGUUCUAGGAAAUUUCAAUG .............................(((((.((((((((((.....))))))))))..)))))........................... ( -8.14 = -8.28 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:37:32 2011