| Sequence ID | dm3.chr3R |
|---|---|
| Location | 19,106,519 – 19,106,592 |
| Length | 73 |
| Max. P | 0.930355 |
| Location | 19,106,519 – 19,106,592 |
|---|---|
| Length | 73 |
| Sequences | 6 |
| Columns | 78 |
| Reading direction | forward |
| Mean pairwise identity | 76.88 |
| Shannon entropy | 0.42885 |
| G+C content | 0.38947 |
| Mean single sequence MFE | -21.43 |
| Consensus MFE | -7.85 |
| Energy contribution | -9.49 |
| Covariance contribution | 1.64 |
| Combinations/Pair | 1.13 |
| Mean z-score | -2.92 |
| Structure conservation index | 0.37 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.35 |
| SVM RNA-class probability | 0.930355 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 19106519 73 + 27905053 AUCCCGUGAUAUCUUUUAUUU-UGGAAUUUUAGUCGGGAU----UUUUUGAUAUUAUGGCCACGCCACGGCGUGCAAC ...((((((((((....((((-(((........)))))))----.....)))))))))).(((((....))))).... ( -21.90, z-score = -2.82, R) >droSim1.chr3R 18922870 73 + 27517382 AUCCCGUGAUAUCUUUUAUUU-UGGAAUUUUAGUCGGGAU----UUUUUGAUAUUAUGGGCACGCCACGGCCUGCAAC ...((((((((((....((((-(((........)))))))----.....))))))))))(((.((....)).)))... ( -21.50, z-score = -2.69, R) >droSec1.super_0 19471374 73 + 21120651 AUCCCGUGAUAUCUUUUAUUU-CGGAAUUUUAGUCGGGAU----UUUUUGAUAUUAUGGGCACGCCACGGACUGCAAC ...((((((((((....((..-(((........)))..))----.....))))))))))(((..(....)..)))... ( -20.00, z-score = -2.43, R) >droYak2.chr3R 19981981 73 + 28832112 AUCCCGUGAUAUCAUUUCUUU-UGGAAUAUUUGUCGGGAU----UUUUUGAUAUUAUGGGCAGGCCACGGUCUGCAAC ...(((((((((((.....((-(.((.......)).))).----....)))))))))))((((((....))))))... ( -25.70, z-score = -3.86, R) >droEre2.scaffold_4820 1522547 73 - 10470090 AUCCCGUGAUAUCAUUUAUUU-UGGAAUUUUUGUCGGGAU----UUUUUGAUAUUAUGGGCAGGCCACGGCCUGCAAC ...(((((((((((...((((-(((........)))))))----....)))))))))))((((((....))))))... ( -29.60, z-score = -5.05, R) >droAna3.scaffold_13340 15413975 78 - 23697760 AUCCUUGAAAACUUGUCAUUUGUUAAGUUUCUAUUUUGACACUGUUUCAAAUAUCAUUUCAAAUCGAUUGCAUGUCUA ....((((((...((..(((((...(((.((......)).)))....)))))..))))))))...(((.....))).. ( -9.90, z-score = -0.68, R) >consensus AUCCCGUGAUAUCUUUUAUUU_UGGAAUUUUAGUCGGGAU____UUUUUGAUAUUAUGGGCACGCCACGGCCUGCAAC ...((((((((((....................................))))))))))(((.((....)).)))... ( -7.85 = -9.49 + 1.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:37:31 2011