| Sequence ID | dm3.chr3R |
|---|---|
| Location | 19,100,546 – 19,100,648 |
| Length | 102 |
| Max. P | 0.653967 |
| Location | 19,100,546 – 19,100,648 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 92.44 |
| Shannon entropy | 0.13884 |
| G+C content | 0.45053 |
| Mean single sequence MFE | -19.63 |
| Consensus MFE | -17.44 |
| Energy contribution | -17.47 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.43 |
| Structure conservation index | 0.89 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.653967 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 19100546 102 + 27905053 AUCCUCCUUUCAGCGGAGUCAGUCGCAGUUGCAGUUUCCUUUCGCAUGCAGCCCAUCCAUUUAAUAAUAACAAUAUCGUAAUUCAGGCAAGUCACUGACAGC--------- .(((.(......).)))((((((.((.((((((((........)).)))))).........................((.......))..)).))))))...--------- ( -19.10, z-score = -1.32, R) >droSim1.chr3R 18916185 102 + 27517382 AUCCUCCAUUCAGCGGAGUCAGUCGCAGUUGCAGUUUCCUUUCGCAUGCAGCCCAUCCAUUUAAUAAUAACAAUAUCGUAAUUCAGGCAAGUCACUGACAGC--------- .(((.(......).)))((((((.((.((((((((........)).)))))).........................((.......))..)).))))))...--------- ( -19.10, z-score = -1.48, R) >droSec1.super_0 19465422 102 + 21120651 AUCCUCCAUUCAGCGGAGUCAGUCGCAGUUGCAGUUUCCUUUCGCAUGCAGCCCAUCCAUUUAAUAAUAACAAUAUCGUAAUUCAGGCAAGUCACUGACAGC--------- .(((.(......).)))((((((.((.((((((((........)).)))))).........................((.......))..)).))))))...--------- ( -19.10, z-score = -1.48, R) >droYak2.chr3R 19975750 102 + 28832112 AUCCUCUUUUCAGCGGAGUCAGUCGCAGUUGCAGUUUCCUUUCGCAUGCAGCCCAUCCAUUUAAUAAUAACAAUAUCGUAAUUCAGGCAAGUCACUGACAGC--------- .(((.((....)).)))((((((.((.((((((((........)).)))))).........................((.......))..)).))))))...--------- ( -20.10, z-score = -1.71, R) >droEre2.scaffold_4820 1516367 102 - 10470090 AUCCACUUUUCAGCGGAGUCAGUCGCAGUUGCAGUUUCCUUUCGCAUGCAGCCCAUCCAUUUAAUAAUAACAAUAUCGUAAUUCAGGCAAGUCACUGACAGC--------- .(((.((....)).)))((((((.((.((((((((........)).)))))).........................((.......))..)).))))))...--------- ( -20.50, z-score = -1.94, R) >droAna3.scaffold_13340 15407408 109 - 23697760 --CACAUCCUUUGCGGAGUCAGUCGCAGUUGCAGCUUCCUUUCGCAUGCAGCCCAUCCAUUUAAUAAUAACAAUAUCGUAAUUCAGGCAAGUCUCUGACAGCUCCACCACU --....(((.....)))(((((..((.((((((((........)).)))))).........................((.......))..))..)))))............ ( -19.90, z-score = -0.61, R) >consensus AUCCUCCUUUCAGCGGAGUCAGUCGCAGUUGCAGUUUCCUUUCGCAUGCAGCCCAUCCAUUUAAUAAUAACAAUAUCGUAAUUCAGGCAAGUCACUGACAGC_________ ............((...((((((.((.((((((((........)).)))))).........................((.......))..)).)))))).))......... (-17.44 = -17.47 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:37:30 2011