| Sequence ID | dm3.chr3R |
|---|---|
| Location | 19,097,835 – 19,097,932 |
| Length | 97 |
| Max. P | 0.935841 |
| Location | 19,097,835 – 19,097,932 |
|---|---|
| Length | 97 |
| Sequences | 9 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 84.40 |
| Shannon entropy | 0.31107 |
| G+C content | 0.41429 |
| Mean single sequence MFE | -26.40 |
| Consensus MFE | -21.86 |
| Energy contribution | -22.74 |
| Covariance contribution | 0.89 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.75 |
| Structure conservation index | 0.83 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.40 |
| SVM RNA-class probability | 0.935841 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 19097835 97 + 27905053 -ACAGUUACAACUUGUGGCAGGCGAUAAAAAAAAA---------UGGCGUCAAUGAAUGCAAAUUACAAAUAGUCUUC-AAGCUAUUUUGUAAUGCCGAGGCCGCGUC-- -.............(((((.(((............---------..((((......))))..((((((((((((....-..)))).)))))))))))...)))))...-- ( -26.20, z-score = -2.11, R) >droSim1.chr3R 18913460 94 + 27517382 -ACAGUUACAACUUGUGGCAGGCGAUAAAAAA------------UGGCGUCAAUGAAUGCAAAUUACAAAUAGUCUUC-UAGCUAUUUUGUAAUGCCGAGGCCGCGUC-- -.............(((((.(((.........------------..((((......))))..((((((((((((....-..)))).)))))))))))...)))))...-- ( -26.20, z-score = -1.96, R) >droSec1.super_0 19462681 94 + 21120651 -ACAGUUACAACUUGUGGCAGGCGAUAAAAAA------------UGGCGUCAAUGAAUGCAAAUUACAAAUAGUCUUC-UAGCUAUUUUGUAAUGCCGAGGCCGCGUC-- -.............(((((.(((.........------------..((((......))))..((((((((((((....-..)))).)))))))))))...)))))...-- ( -26.20, z-score = -1.96, R) >droYak2.chr3R 19972980 96 + 28832112 -ACAGUUACAACUUGUGGCAGGCGAUAAAAAAAA----------UGGCGUCAAUGAAUGCAAAUUACAAAUAGUCUUC-AAGCUAUUUUGUAAUGCCGAGGCCGCGUC-- -.............(((((.(((...........----------..((((......))))..((((((((((((....-..)))).)))))))))))...)))))...-- ( -26.20, z-score = -2.08, R) >droEre2.scaffold_4820 1513682 106 - 10470090 -ACAGUUACAACUUGUGGCAGGCGAUAAAAAAAAAAGAAAAAACUGGCGUCAAUGAAUGCAAAUUACAAAUAGUCUUC-AAGCUAUUUUGUAAUGCCGAGGCCGCGUC-- -.............(((((.(((.......................((((......))))..((((((((((((....-..)))).)))))))))))...)))))...-- ( -26.20, z-score = -1.96, R) >droAna3.scaffold_13340 15404901 95 - 23697760 -ACAGUUACAACUUGUGGCAGGCGAUAAAAAAG-----------CGGCGUCAAUGAAUGCAAAUUACAAAUAGUCUUG-AAGCUAUUUUGUAAUGCCGAGGCCGCCUC-- -.............(((((.(((..........-----------..((((......))))..((((((((((((....-..)))).)))))))))))...)))))...-- ( -25.30, z-score = -1.24, R) >dp4.chr2 21246780 105 - 30794189 CACACUUGCAACUUGUGGCAGGCGAUAAAAAGCAGAGAAG----CGGCGUCAAUGAAUGCAAAUUACAAAUAGUCUUG-AAGCUAUUUUGUAAUGCCGAGGCCGCGUGUC .((((((((...((((.(....).))))...))))....(----((((.((..((....)).((((((((((((....-..)))).))))))))...)).))))))))). ( -29.70, z-score = -0.98, R) >droPer1.super_0 10932657 105 + 11822988 CACACUUGCAACUUGUGGCAGGCGAUAAAAAGCAGAGAAG----CGGCGUCAAUGAAUGCAAAUUACAAAUAGUCUUG-AAGCUAUUUUGUAAUGCCGAUGCCGCGUGUC .((((((((...((((.(....).))))...))))....(----(((((((..((....)).((((((((((((....-..)))).))))))))...)))))))))))). ( -31.50, z-score = -1.64, R) >droWil1.scaffold_181089 11648788 98 - 12369635 ----------ACCAUAAAGAAAAAAUAAGAAAAAAAAAGACGAACGGCGUCAAUGAAUGCAAAUUACAAAUAGUCUUGGAAGCUAUUUUGUAAUGCCGAGGCCGCGUC-- ----------............................((((..((((.((..((....)).((((((((((((.......)))).))))))))...)).))))))))-- ( -20.10, z-score = -1.84, R) >consensus _ACAGUUACAACUUGUGGCAGGCGAUAAAAAAAA__________UGGCGUCAAUGAAUGCAAAUUACAAAUAGUCUUC_AAGCUAUUUUGUAAUGCCGAGGCCGCGUC__ ..............(((((.(((.......................((((......))))..((((((((((((.......)))).)))))))))))...)))))..... (-21.86 = -22.74 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:37:28 2011