| Sequence ID | dm3.chr3R |
|---|---|
| Location | 19,096,845 – 19,096,959 |
| Length | 114 |
| Max. P | 0.632825 |
| Location | 19,096,845 – 19,096,959 |
|---|---|
| Length | 114 |
| Sequences | 12 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 95.54 |
| Shannon entropy | 0.09121 |
| G+C content | 0.42405 |
| Mean single sequence MFE | -33.88 |
| Consensus MFE | -26.26 |
| Energy contribution | -25.76 |
| Covariance contribution | -0.50 |
| Combinations/Pair | 1.16 |
| Mean z-score | -2.22 |
| Structure conservation index | 0.77 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.30 |
| SVM RNA-class probability | 0.632825 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 19096845 114 - 27905053 UUUUGCGCUAAAUUGU------UUGGUGAGUGCCUGAUAACAAUAUUUGCACUAAUUUGGCAUUUUUAAGUGUGCUCCACUGACACUUGAUGCGCUUUUAAUUGCGCCCAGGCGCUCGAG ......(((((.....------)))))(((((((((...........(((.(......))))...((((((((.(......))))))))).((((........)))).)))))))))... ( -34.70, z-score = -2.42, R) >droAna3.scaffold_13340 15404040 114 + 23697760 UUUUGCGCUAAAUUGU------UUGGUGAGUGCCUGAUAACAAUAUUUGCACUAAUUUGGCAUUUUUAAGUGUGCUCCACUGACACUUGAUGCGCUUUUAAUUGCACCCAGGCGCUCGAG ......(((((.....------)))))(((((((((.......................(((((...((((((.(......))))))))))))((........))...)))))))))... ( -31.40, z-score = -1.70, R) >droEre2.scaffold_4820 1512599 114 + 10470090 UUUUGCGCUAAAUUGU------UUGGUGAGUGCCUGAUAACAAUAUUUGCACUAAUUUGGCAUUUUUAAGUGUGCUCCACUGACACUUGAUGCGCUUUUAAUUGCGCCCAGGCGCUCGAG ......(((((.....------)))))(((((((((...........(((.(......))))...((((((((.(......))))))))).((((........)))).)))))))))... ( -34.70, z-score = -2.42, R) >droYak2.chr3R 19971887 114 - 28832112 UUUUGCGCUAAAUUGU------UUGGUGAGUGCCUGAUAACAAUAUUUGCACUAAUUUGGCAUUUUUAAGUGUGCUCCACUGACACUUGAUGCGCUUUUAAUUGCGCCCUGGCGCUCGAG ....((((((...(((------(..((.(((((..((((....)))).))))).))..))))...((((((((.(......))))))))).((((........))))..))))))..... ( -32.90, z-score = -2.17, R) >droSec1.super_0 19461652 114 - 21120651 UUUUGCGCUAAAUUGU------UUGGUGAGUGCCUGAUAACAAUAUUUGCACUAAUUUGGCAUUUUUAAGUGUGCUCCACUGACACUUGAUGCGCUUUUAAUUGCGCCCAGGCGCUCGAG ......(((((.....------)))))(((((((((...........(((.(......))))...((((((((.(......))))))))).((((........)))).)))))))))... ( -34.70, z-score = -2.42, R) >droSim1.chr3R 18912421 114 - 27517382 UUUUGCGCUAAAUUGU------UUGGUGAGUGCCUGAUAACAAUAUUUGCACUAAUUUGGCAUUUUUAAGUGUGCUCCACUGACACUUGAUGCGCUUUUAAUUGCGCCCAGGCGCUCGAG ......(((((.....------)))))(((((((((...........(((.(......))))...((((((((.(......))))))))).((((........)))).)))))))))... ( -34.70, z-score = -2.42, R) >droPer1.super_0 10929598 120 - 11822988 UUUUGCGCUAAAUUGUUUGGCGUUGGCGAGUGCCUGAUAACAAUAUUUGCACUAAUUUGGCAUUUUUAAGUGUGCUCCACUGACACUUGAUGCGCUUUUAAUUGCGCCCGGGCGCUCGAG ....(((((((.....)))))))...((((((((((...........(((.(......))))...((((((((.(......))))))))).((((........)))).)))))))))).. ( -41.10, z-score = -2.84, R) >dp4.chr2 21243687 120 + 30794189 UUUUGCGCUAAAUUGUUUGGCGUUGGCGAGUGCCUGAUAACAAUAUUUGCACUAAUUUGGCAUUUUUAAGUGUGCUCCACUGACACUUGAUGCGCUUUUAAUUGCGCCCGGGCGCUCGAG ....(((((((.....)))))))...((((((((((...........(((.(......))))...((((((((.(......))))))))).((((........)))).)))))))))).. ( -41.10, z-score = -2.84, R) >droWil1.scaffold_181089 11647838 113 + 12369635 UUUUGCGCUAAAUUGU------UUGGUGAGUGCCUGAUAACAAUAUUUGCACUAAUUUGGCAUUUUUAAGUGUGCUCCACUGACACUUGAUGCGCUUUUAAUUGCG-CCAAGCGCUCGAG ....(((((....(((------(..((.(((((..((((....)))).))))).))..))))...((((((((.(......))))))))).((((........)))-)..)))))..... ( -32.00, z-score = -1.80, R) >droVir3.scaffold_13047 13400298 113 - 19223366 UUUUGCGCUAAAUUGU------UUGGUGAGUGCCUGAUAACAAUAUUUGCACUAAUUUGGCAUUUUUAAGUGUGCUCCACUGACACUUGAUGCGCUUUUAAUUGCG-CCGAAUGCUCGAG .....((((((.....------))))))(((((..((((....)))).)))))...(((((((((((((((((.(......))))))))).((((........)))-).)))))).))). ( -31.10, z-score = -2.13, R) >droMoj3.scaffold_6540 10636242 113 - 34148556 UUUUACGUUAAAUUGU------UUGGUGAGUGCCUGAUAACAAUAUUUGCACUAAUUUGGCAUUUUUAAGUGUGCUCCACUGACACUUGAUGCGCUUUUAAUUGCG-CCGAAUGCUCAAG ................------......(((((..((((....)))).)))))...(((((((((((((((((.(......))))))))).((((........)))-).)))))).))). ( -27.50, z-score = -1.49, R) >droGri2.scaffold_14906 9884035 113 + 14172833 UUUUGCGCUAAAUUGU------UUGGUGAGUGCCUGAUAACAAUAUUUGCACUAAUUUGGCAUUUUUAAGUGUGCUCCACUGACACUUGAUGCGCUUUUAAUUGCG-CCAAAUGCUCGAG .....((((((.....------))))))(((((..((((....)))).)))))...(((((((((((((((((.(......))))))))).((((........)))-).)))))).))). ( -30.70, z-score = -2.01, R) >consensus UUUUGCGCUAAAUUGU______UUGGUGAGUGCCUGAUAACAAUAUUUGCACUAAUUUGGCAUUUUUAAGUGUGCUCCACUGACACUUGAUGCGCUUUUAAUUGCGCCCAGGCGCUCGAG ....(((((....(((........(((.(((((..((((....)))).)))))......(((((...((((((.(......))))))))))))))).......)))....)))))..... (-26.26 = -25.76 + -0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:37:27 2011