| Sequence ID | dm3.chr3R |
|---|---|
| Location | 19,088,828 – 19,088,925 |
| Length | 97 |
| Max. P | 0.996353 |
| Location | 19,088,828 – 19,088,925 |
|---|---|
| Length | 97 |
| Sequences | 5 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 95.17 |
| Shannon entropy | 0.08309 |
| G+C content | 0.27481 |
| Mean single sequence MFE | -17.47 |
| Consensus MFE | -14.90 |
| Energy contribution | -15.10 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -3.79 |
| Structure conservation index | 0.85 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.92 |
| SVM RNA-class probability | 0.996353 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 19088828 97 - 27905053 CAAUUUUAAAUAACUAUAAAAUUUACCAUAUUUUUAUUAAGCAAACAAAUGAACAAAUGAAGAUACGCCC-AAACAGGGCGACUUUUAAAUGGAACUU .(((((((........)))))))..(((((((((((((...((......))....))))))))).(((((-.....)))))........))))..... ( -17.80, z-score = -4.20, R) >droSim1.chr3R 18904388 97 - 27517382 CAAUUUUAAAUAACUAUAAAAUUUACCAUAUUUUUAUUAAGCAAACAAAUGAACAAAUGAAGAUACGCCC-AAACAGGGCGACUUUUAAAUGGAACUU .(((((((........)))))))..(((((((((((((...((......))....))))))))).(((((-.....)))))........))))..... ( -17.80, z-score = -4.20, R) >droSec1.super_0 19453641 97 - 21120651 CAAUUUUAAAUAACUAUAAAAUUUACCAUAUUUUUAUUAAGCAAACAAAUGAACAAAUGAAGAUACGCCC-AAACAGGGCGACUUUUAAAUGGAACAU .(((((((........)))))))..(((((((((((((...((......))....))))))))).(((((-.....)))))........))))..... ( -17.80, z-score = -4.31, R) >droYak2.chr3R 19963700 97 - 28832112 CAAUUUUAAAUAACUAUAAAAUUUACCAUAGUUUUAUUAACCAAAUGGAAGAACAAAUGAAGAUACGCCC-AAACAGGGCGACUUUUAAAUGGAACUU .(((((((........)))))))......(((((((((..((....)).................(((((-.....))))).......))))))))). ( -17.30, z-score = -2.91, R) >droEre2.scaffold_4820 1504507 96 + 10470090 CAAUUUUAAAUAACUAUAAAAUUUACCAUAUUUUUAUUAACCAAA-GGAAGAAC-AAUGAAGAUACGCCCAAAACAGGGCGACUUUUAAAUGGAACUU .(((((((........)))))))..(((((((((((((.......-........-))))))))).(((((......)))))........))))..... ( -16.66, z-score = -3.32, R) >consensus CAAUUUUAAAUAACUAUAAAAUUUACCAUAUUUUUAUUAAGCAAACAAAUGAACAAAUGAAGAUACGCCC_AAACAGGGCGACUUUUAAAUGGAACUU .(((((((........)))))))..(((((((((((((...(........)....))))))))).(((((......)))))........))))..... (-14.90 = -15.10 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:37:26 2011