| Sequence ID | dm3.chr3R |
|---|---|
| Location | 19,073,195 – 19,073,295 |
| Length | 100 |
| Max. P | 0.672225 |
| Location | 19,073,195 – 19,073,295 |
|---|---|
| Length | 100 |
| Sequences | 11 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 75.20 |
| Shannon entropy | 0.52176 |
| G+C content | 0.43900 |
| Mean single sequence MFE | -27.03 |
| Consensus MFE | -13.54 |
| Energy contribution | -13.03 |
| Covariance contribution | -0.51 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.34 |
| Structure conservation index | 0.50 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.672225 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 19073195 100 + 27905053 UUAUAGGGUAU-AACCGGA------AAGGGGAAAGUUUGCUUGGUGGCCUGGCC-----AUAAAGUGGUCGGGAUUAAUGGCAAAAUGGCGUCAGUUUGUUUU-GUGAUUUCU (((((((....-..))...------..((.(....((((((......(((((((-----((...)))))))))......))))))....).)).........)-))))..... ( -25.70, z-score = -0.85, R) >droSim1.chr3R 18888658 100 + 27517382 UGAUAGGGUAU-AACCGGA------AAGGGGAAAGUUUGCUUGGUGGCCUGGCC-----AUAAAGUGGUCGGGAUUAAUGGCAAAAUGGCGUCAGUUUGUUUU-GUGAUUUCU .((.....(((-((.((((------..((.(....((((((......(((((((-----((...)))))))))......))))))....).))..))))..))-)))...)). ( -25.30, z-score = -0.68, R) >droSec1.super_0 19437768 100 + 21120651 UGAUAGGGUAU-AACCGGA------AAGGGGAAAGUUUGCUUGGUGGCCUGGCC-----AUAAAGUGGUCGGGAUUAAUGGCAAAAUGGCGUCAGUUUGUUUU-GUGAUUUCU .((.....(((-((.((((------..((.(....((((((......(((((((-----((...)))))))))......))))))....).))..))))..))-)))...)). ( -25.30, z-score = -0.68, R) >droYak2.chr3R 19947905 101 + 28832112 UGAUAGGGUAU-AACCGGA------AAGGGGAAAGUUUGCUUGGUGGCCUGGCC-----AUAAAGUGGUCGGGAUUAAUGGCAAAAUGGCGUCAGUUUGUUUUUGUGAUUUCU .....((....-..))(((------((..(.((((((((((......(((((((-----((...)))))))))......))))))...(((......))))))).)..))))) ( -25.20, z-score = -0.52, R) >droEre2.scaffold_4820 1487197 100 - 10470090 CAAGAGGGUAU-AGCCGGA------AAGGGGCAAGUUUGUUUGGUGGCCUGGCC-----AUAAAGUGGUCGGGAUUAAUGGCAAAAUGGCGUCAGUUUGUUUU-GUGAUUUCU ..(((((.(((-((.((((------..((.((...((((((......(((((((-----((...)))))))))......))))))...)).))..))))..))-))).))))) ( -29.20, z-score = -1.80, R) >droAna3.scaffold_13340 15379419 105 - 23697760 CCACAGAAUAC--CCUGGCAGGGAAGACGGGCAAGUUUGCUUGUUAGCCUGGCC-----AUAAAGUGGUCGGGAUUAAUGGCAAAAUGGCGUCAGUUUGUUUU-CUGAUUUUU ...(((((.((--.(((((.(......)..((...((((((.((((((((((((-----((...))))))))).)))))))))))...)))))))...)).))-)))...... ( -35.80, z-score = -2.18, R) >dp4.chr2 21216850 108 - 30794189 UUAUAGGGUAUCAACUGCAGGGCUUGGGGGGCAAGUUUGUUUGUUUGCUCGGCCC----AUAAAGUGGUCGGGAUUAAUGGCAAAAUGGCGUCAGUUUGUUUA-GUGAUUUUC .....(((.((((.(((..(((((...((.((...((((((......((((((((----.....).)))))))......))))))...)).)))))))...))-))))).))) ( -26.30, z-score = -0.24, R) >droPer1.super_0 10902728 108 + 11822988 UUAUAGGGUAUCAACUGCAUAGCUUGGGGGGCAAGUUUGUUUGUUUGCUCGGCCC----AUAAAGUGGUCGGGAUUAAUGGCAAAAUGGCGUCAGUUUGUUUA-GUGAUUUUC .....(((.((((...(((.((((...((.((...((((((......((((((((----.....).)))))))......))))))...)).)))))))))...-.)))).))) ( -26.40, z-score = -0.48, R) >droWil1.scaffold_181130 8683465 106 + 16660200 UCAAGGAGCGUUAGCGUCA-----CGAGUAAAAAGUUUGUUU-UUAACCUGGCCAUAAAAUAAACUGGUCAGGAUUAAUGGCAAAAUGGCGUCAGUUUGUUUU-UUGAUUUUC ((((((((((...((((((-----...........(((((..-((((((((((((..........)))))))).))))..))))).)))))).....))))))-))))..... ( -31.30, z-score = -3.63, R) >droGri2.scaffold_15074 6176603 80 - 7742996 -------------------------AAGCCGCAAGUUUGUUU--UGGCCUGUCC-----GUAAAGUGGCCGGAAUUAAUGGCAAAAUGGCGUCAGCUUGUUUU-GUUUUGCUU -------------------------.....(((((((.((((--(((((.....-----.......))))))))).)))(((((((((((....)).))))))-))))))).. ( -22.70, z-score = -0.78, R) >droVir3.scaffold_13047 8058228 75 + 19223366 ------------------------------GCAAGUUUGUUU--UUGCCUGGCC-----AUCAAGUGGCCAGAAUUAAUGCCAAAAUGGCGUCAGCUUGUUUUCUUUUUUUU- ------------------------------(((((((.....--....((((((-----((...)))))))).....(((((.....))))).)))))))............- ( -24.10, z-score = -2.88, R) >consensus UGAUAGGGUAU_AACCGGA______AAGGGGCAAGUUUGUUUGGUGGCCUGGCC_____AUAAAGUGGUCGGGAUUAAUGGCAAAAUGGCGUCAGUUUGUUUU_GUGAUUUUU ...................................((((((......(((((((............)))))))......))))))..(((....)))................ (-13.54 = -13.03 + -0.51)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:37:24 2011