| Sequence ID | dm3.chr3R |
|---|---|
| Location | 19,036,683 – 19,036,773 |
| Length | 90 |
| Max. P | 0.520030 |
| Location | 19,036,683 – 19,036,773 |
|---|---|
| Length | 90 |
| Sequences | 7 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 68.82 |
| Shannon entropy | 0.57657 |
| G+C content | 0.62079 |
| Mean single sequence MFE | -28.86 |
| Consensus MFE | -9.67 |
| Energy contribution | -9.98 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.74 |
| Structure conservation index | 0.34 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.520030 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 19036683 90 - 27905053 UCGUUAGCUACGGCGUAAACAAGUCUCGGGC----CAC-AAAGCACGCCGUAAGAGAGUGCUCC-----GGCCCCCCUUCCAAGUUCCGCAUACGCCCCC ...........((((((..........((((----(..-..(((((.((....).).)))))..-----))))).........(.....).))))))... ( -26.90, z-score = -1.80, R) >droSim1.chr3R 18849187 94 - 27517382 UCGUUCGCUACGGCGUAAACAAGUCCCGGGC----CAC-AAAGCACGCCGUAAGAGAGUGCUCCA-GCCGGCCCCCCGUUCAAGUUCCGCAUACGCCCCC ...........((((((..........((((----(..-..(((((.((....).).)))))...-...))))).........(.....).))))))... ( -26.40, z-score = -0.94, R) >droSec1.super_0 19399690 95 - 21120651 UCGUUCGCUACGGCGUAAACAAGUCCCGGGC----CACAAAAGCACGCCGUAAGAGAGUGCUCCA-GCCGGCCCCCCGUCCAAGUUCCGCAUACGCCCCC ...........((((((..........((((----(.....(((((.((....).).)))))...-...))))).........(.....).))))))... ( -26.80, z-score = -1.18, R) >droYak2.chr3R 19906981 76 - 28832112 UCGUUCGCUACGGCGUAAACAAGUUUCGGGC----CAC-AAAGCACGCCGUAAGAGAAUGCUCC-----GGACCACCGGCCCCCCC-------------- ..((((((....)))..))).......((((----(..-..((((..((....).)..))))..-----((....)))))))....-------------- ( -24.00, z-score = -1.09, R) >droEre2.scaffold_4820 1442192 90 + 10470090 UCGUUCGCUACGCCGUAAACAAGUCCCGGGC----CAC-AAAACACGCCGUAAGAGAAUGCUCC-----GGCCCCCCGCCCAAGUUCCGCAUUCGCCCCC ..(((..(......)..))).......((((----...-.........(....).((((((...-----(((.....)))........)))))))))).. ( -18.90, z-score = 0.12, R) >dp4.chr2 21170112 89 + 30794189 ---------GUGGCGUAAACAAGUCCCGGGCACGGUCCCAGGGCACGCCGUAAGAGAGUGCUCUGUGUCUGUGUCAGACUCUGUCUCUGUAUGCCCCC-- ---------..((((((.(((((((...(((((((.(.((((((((.((....).).)))))))).).))))))).)))).))).....))))))...-- ( -39.50, z-score = -3.66, R) >droPer1.super_0 10857181 89 - 11822988 ---------GUGGCGUAAACAAGUCCCGGGCACGGUCCCAGGGCACGCCGUAAGAGAGUGCUCUGUGUCUGUGUCAGACUCUGUCUCUGUAUGCCCCU-- ---------..((((((.(((((((...(((((((.(.((((((((.((....).).)))))))).).))))))).)))).))).....))))))...-- ( -39.50, z-score = -3.62, R) >consensus UCGUUCGCUACGGCGUAAACAAGUCCCGGGC____CAC_AAAGCACGCCGUAAGAGAGUGCUCC__G_CGGCCCCCCGCCCAAGUUCCGCAUACGCCCCC ...........(((........)))..((((..........(((((.((....).).)))))........)))).......................... ( -9.67 = -9.98 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:37:22 2011