| Sequence ID | dm3.chr3R |
|---|---|
| Location | 19,026,186 – 19,026,279 |
| Length | 93 |
| Max. P | 0.847596 |
| Location | 19,026,186 – 19,026,279 |
|---|---|
| Length | 93 |
| Sequences | 7 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 75.98 |
| Shannon entropy | 0.42538 |
| G+C content | 0.38760 |
| Mean single sequence MFE | -19.97 |
| Consensus MFE | -10.12 |
| Energy contribution | -10.36 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.25 |
| Mean z-score | -2.04 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.90 |
| SVM RNA-class probability | 0.847596 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 19026186 93 - 27905053 CAAAAAAAAAAAAUCAAAAAUAAAGACAACACAAUACAAA-----GUCUGUCUGCAACGGAAACGGCAAUAUCGAAGUUGCGAUUGGAUUGCUUUUGC ..............(((((....(((((..((........-----)).)))))((((((....))(((((......))))).......))))))))). ( -16.70, z-score = -1.60, R) >droSim1.chr3R 18838763 88 - 27517382 -----CAAAAAAAUCAAAAAUAAAGACAACACAAUACAAA-----GGCUGUCUGCAACGGAAACGGCAAUAUCGAAGUUGCGAUUGGAUUGCUUUUGC -----...............................((((-----(((.((((....((....))(((((......)))))....)))).))))))). ( -20.10, z-score = -2.72, R) >droSec1.super_0 19389300 88 - 21120651 -----CAAAAAAAUCAAAAAUAAAGACAACACAAUACAAA-----GACUGUCUGCAACGGAAACGGCAAUAUCGAAGUUGCGAUUGGAUUGCUUUUGC -----(((((.((((........(((((............-----...))))).(((((....))(((((......)))))..)))))))..))))). ( -16.26, z-score = -1.66, R) >droYak2.chr3R 19896371 90 - 28832112 ---CAAAAAAAAAUCAAAAAUAAAGACAACACAAUACAAA-----GUCUGUCUGCAACGGAAACGGCAAUAUCGAAGUUGUGAUUGGAUUGCUUUUGC ---..................((((.(((..((((((((.-----.((.((.(((..((....)))))..)).))..)))).))))..)))))))... ( -16.80, z-score = -1.53, R) >droEre2.scaffold_4820 1431520 93 + 10470090 CAAACAAAAAAAAUCAAAAAUAAAGACAACACAAUACAAC-----GUCUGUCUGCAACGGAAACGGCAAUAUCGAAGUUGCGAUUGGAUUGCUUUUGC ....(((((..((((........(((((..((........-----)).))))).(((((....))(((((......)))))..)))))))..))))). ( -18.10, z-score = -1.84, R) >dp4.chr2 21156757 88 + 30794189 --------AAAAAUAAAAGUU--GGACAACAAAAAGUUAACGUCUGUCUGUCUGCAGCGGAAACAGCAGACAGAUCGGUGGAGGAGGACUGUGUGUGC --------.............--(.(((.((...((((..(.(((((((((((((...(....).))))))))))....))).)..)))).))))).) ( -26.60, z-score = -2.82, R) >droPer1.super_0 10843565 88 - 11822988 --------AAAAAUAAAAGUU--GGACAACAAAAAGCUAACGUCUGUCUGUCUGCAGCGGAAACAGCAGACAGAUCGGUGGAGGAGGACUGUGUGUGC --------.............--(.((((((.....((..(..(.((((((((((...(....).)))))))))).)..)..)).....))).))).) ( -25.20, z-score = -2.08, R) >consensus _____AAAAAAAAUCAAAAAUAAAGACAACACAAUACAAA_____GUCUGUCUGCAACGGAAACGGCAAUAUCGAAGUUGCGAUUGGAUUGCUUUUGC .......................(((((....................)))))((((((....))(((((......))))).......))))...... (-10.12 = -10.36 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:37:21 2011