| Sequence ID | dm3.chr2L |
|---|---|
| Location | 8,397,102 – 8,397,203 |
| Length | 101 |
| Max. P | 0.659674 |
| Location | 8,397,102 – 8,397,203 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 121 |
| Reading direction | forward |
| Mean pairwise identity | 68.17 |
| Shannon entropy | 0.54489 |
| G+C content | 0.54128 |
| Mean single sequence MFE | -33.55 |
| Consensus MFE | -18.16 |
| Energy contribution | -19.50 |
| Covariance contribution | 1.34 |
| Combinations/Pair | 1.37 |
| Mean z-score | -1.04 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.36 |
| SVM RNA-class probability | 0.659674 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 8397102 101 + 23011544 -----------------UACAUACCACCUCCGAGGUUUAACAAUGAGCAAGGAUCAAGGAUGGCGACGGAGUGUCCUUGCUGUGGCCAU-GCCAAGUCAUUGAACCCGGAGGAACCUCU-- -----------------.........((((((.((((...(((((((((((((.((....((....))...)))))))))..((((...-))))..)))))))))))))))).......-- ( -39.30, z-score = -3.32, R) >droSim1.chr2L 8183550 101 + 22036055 -----------------UACAUACCACCUCCGAGGUUUAACAAUGGGCAAGGAGGAAGGAUGGCGGCGGAGUGUCCUUGCUGUGGCCAU-GCCAAGUCAUUGUGCACGGAGGAACCUCU-- -----------------.........((((((..((...((((((((((((((.(.....((....))...).)))))))).((((...-))))...)))))))).)))))).......-- ( -33.10, z-score = -0.07, R) >droSec1.super_3 3893605 101 + 7220098 -----------------UACAUACCACCUCCGAGGUUUAACAAUGGGCAAGGAGCAAGGAUGGCGACGGAGUGUCCUUGCUGUGGCCAU-GCCAAGUCAUUGUGCACGGAGGAACCUCU-- -----------------.........((((((..((...((((((((((.((((((((((((.(......)))))))))))....)).)-)))....)))))))).)))))).......-- ( -36.90, z-score = -1.59, R) >droYak2.chr2L 11034460 101 + 22324452 -----------------UACAUACCACCUCCUAUGUUUGGUAAUAGACAAGGAGCAAAGAUGAAGACGGGGUGUCCUUGCUGUGGCCGU-ACAACGACACUGAACACGGAGGAGCCUCU-- -----------------..(((.....(((((.((((((....))))))))))).....))).....(((((.((((..(((((..(((-........)).)..)))))))))))))).-- ( -28.50, z-score = -0.69, R) >droEre2.scaffold_4929 17305489 101 + 26641161 -----------------UACAUACCACCUCCUAGGCUUAGCAAUGGGCAAGGAGCAAGGAUGGGGACGGGGUGUCCUUGCUGUGGCCGU-GCAACGACAUUGAACACGGAGGAGACUCU-- -----------------......((((.((((..(((((....))))).))))(((((((((....).....)))))))).)))).(((-((((.....)))..))))(((....))).-- ( -35.30, z-score = -1.22, R) >droAna3.scaffold_12916 5479304 119 + 16180835 UCCACCGGGCGUCAGGCGUUACCCAACCGAUGACGGCUA-CAACGAAUCCCGAUACUGUAGGAAUACCCCAUGUUGCUGCUCCUGUCACCGCAAUUUUGUUCCGC-CUCAGGAGCUAUUCG ......((.(((((...(((....)))...))))).)).-...(((((...((((..((((.((((.....)))).))))...))))...........(((((..-....))))).))))) ( -28.20, z-score = 0.63, R) >consensus _________________UACAUACCACCUCCGAGGUUUAACAAUGGGCAAGGAGCAAGGAUGGCGACGGAGUGUCCUUGCUGUGGCCAU_GCAAAGUCAUUGAACACGGAGGAACCUCU__ ..........................((((((........(((((((((((((.((....((....))...)))))))))).((((....))))...)))))....))))))......... (-18.16 = -19.50 + 1.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:25:52 2011