Locus 11149

Sequence ID dm3.chr3R
Location 19,020,283 – 19,020,387
Length 104
Max. P 0.989622
window15320 window15321

overview

Window 0

Location 19,020,283 – 19,020,387
Length 104
Sequences 6
Columns 114
Reading direction forward
Mean pairwise identity 85.29
Shannon entropy 0.26907
G+C content 0.43580
Mean single sequence MFE -25.82
Consensus MFE -20.06
Energy contribution -21.50
Covariance contribution 1.44
Combinations/Pair 1.04
Mean z-score -1.33
Structure conservation index 0.78
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.03
SVM RNA-class probability 0.507905
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3R 19020283 104 + 27905053
---------GUUUCGUGUUUUU-UUUUUUGUCAUUAACUUGAUUUAUGUGUGUGCACAAAUCGAGUCCCAUGACAGCCGCAGUCUGAGUUUCGCAGUUCGAGUCGCAACUUAAG
---------.............-....(((((((..((((((((..((((....))))))))))))...)))))))........((((((.(((.......).)).)))))).. ( -22.00, z-score =  -0.52, R)
>droEre2.scaffold_4820 1425531 101 - 10470090
---------GUUUCGUGUGU----UUUUUGUCAUUAACUUGAUUUAUGUGUGUGCACAAAUCGAGUCCCAUGACAGCCGCAGUCUGAGUUUCGCAGUUCGAGGCGCAACUUAAG
---------.....(((.((----....((((((..((((((((..((((....))))))))))))...)))))))))))....((((((.(((........))).)))))).. ( -28.50, z-score =  -1.76, R)
>droYak2.chr3R 19890403 114 + 28832112
GUUUCGUGUGUUUUUUUUUUCAGUUUUUUGUCAUUAACUUGAUUUAUGUGUGUGCACAAAUCGAGUCCCAUGACAGCCGCAGUCUGAGUUUCGCAGUUCGCGGCGCAACUUAAG
......(((...................((((((..((((((((..((((....))))))))))))...))))))(((((...(((.......)))...))))))))....... ( -31.00, z-score =  -2.38, R)
>droSec1.super_0 19383525 102 + 21120651
---------GUUUCGUGUGU---UUUUUUGUCAUUAACUUGAUUUAUACGUGUGCACAAAUCGAGUCCCAUGACAGCCGCAGUCUGAGUUUCGCAGUUCGAGGCGCAACUUAAG
---------.....(((.((---.....((((((..(((((((((....((....)))))))))))...)))))))))))....((((((.(((........))).)))))).. ( -23.50, z-score =  -0.32, R)
>droSim1.chr3R 18832932 102 + 27517382
---------GUUUCGUGUGU---UUUUUUGUCAUUAACUUGAUUUAUGUGUGUGCACAAAUCGAGUCCCAUGACAGCCGCAGUCUGAGUUUCGCAGUUCGAGGCGCAACUUAAG
---------.....(((.((---.....((((((..((((((((..((((....))))))))))))...)))))))))))....((((((.(((........))).)))))).. ( -28.10, z-score =  -1.65, R)
>droAna3.scaffold_13340 15322753 84 - 23697760
-------------CGUGUGU---UUUUUUGUCAUUAACUUGAUUUAUGUGUGUGCACAAAUCGAGUCCCAUGACAGCCCGAGUCGGAG--UCGCAACUUGAG------------
-------------..((((.---.....((((((..((((((((..((((....))))))))))))...))))))(((((...))).)--))))).......------------ ( -21.80, z-score =  -1.35, R)
>consensus
_________GUUUCGUGUGU___UUUUUUGUCAUUAACUUGAUUUAUGUGUGUGCACAAAUCGAGUCCCAUGACAGCCGCAGUCUGAGUUUCGCAGUUCGAGGCGCAACUUAAG
...........................(((((((..(((((((((.(((....))).)))))))))...)))))))........((((((.(((........))).)))))).. (-20.06 = -21.50 +   1.44)

alignment

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secondary structure

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dotplot

Postscript

Window 1

Location 19,020,283 – 19,020,387
Length 104
Sequences 6
Columns 114
Reading direction reverse
Mean pairwise identity 85.29
Shannon entropy 0.26907
G+C content 0.43580
Mean single sequence MFE -26.38
Consensus MFE -20.61
Energy contribution -21.03
Covariance contribution 0.42
Combinations/Pair 1.12
Mean z-score -2.74
Structure conservation index 0.78
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 2.38
SVM RNA-class probability 0.989622
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3R 19020283 104 - 27905053
CUUAAGUUGCGACUCGAACUGCGAAACUCAGACUGCGGCUGUCAUGGGACUCGAUUUGUGCACACACAUAAAUCAAGUUAAUGACAAAAAA-AAAAACACGAAAC---------
.............(((..(((((..........))))).((((((..((((.((((((((......)))))))).)))).)))))).....-.......)))...--------- ( -23.80, z-score =  -2.13, R)
>droEre2.scaffold_4820 1425531 101 + 10470090
CUUAAGUUGCGCCUCGAACUGCGAAACUCAGACUGCGGCUGUCAUGGGACUCGAUUUGUGCACACACAUAAAUCAAGUUAAUGACAAAAA----ACACACGAAAC---------
.....(((..(((.((..(((.......)))..)).)))((((((..((((.((((((((......)))))))).)))).))))))...)----)).........--------- ( -25.70, z-score =  -2.25, R)
>droYak2.chr3R 19890403 114 - 28832112
CUUAAGUUGCGCCGCGAACUGCGAAACUCAGACUGCGGCUGUCAUGGGACUCGAUUUGUGCACACACAUAAAUCAAGUUAAUGACAAAAAACUGAAAAAAAAAACACACGAAAC
....((((..((((((..(((.......)))..))))))((((((..((((.((((((((......)))))))).)))).))))))...))))..................... ( -32.20, z-score =  -4.16, R)
>droSec1.super_0 19383525 102 - 21120651
CUUAAGUUGCGCCUCGAACUGCGAAACUCAGACUGCGGCUGUCAUGGGACUCGAUUUGUGCACACGUAUAAAUCAAGUUAAUGACAAAAAA---ACACACGAAAC---------
.....(((..(((.((..(((.......)))..)).)))((((((..((((.(((((((((....))))))))).)))).))))))....)---)).........--------- ( -27.30, z-score =  -2.46, R)
>droSim1.chr3R 18832932 102 - 27517382
CUUAAGUUGCGCCUCGAACUGCGAAACUCAGACUGCGGCUGUCAUGGGACUCGAUUUGUGCACACACAUAAAUCAAGUUAAUGACAAAAAA---ACACACGAAAC---------
.....(((..(((.((..(((.......)))..)).)))((((((..((((.((((((((......)))))))).)))).))))))....)---)).........--------- ( -25.70, z-score =  -2.28, R)
>droAna3.scaffold_13340 15322753 84 + 23697760
------------CUCAAGUUGCGA--CUCCGACUCGGGCUGUCAUGGGACUCGAUUUGUGCACACACAUAAAUCAAGUUAAUGACAAAAAA---ACACACG-------------
------------(((.(((((...--...))))).))).((((((..((((.((((((((......)))))))).)))).)))))).....---.......------------- ( -23.60, z-score =  -3.16, R)
>consensus
CUUAAGUUGCGCCUCGAACUGCGAAACUCAGACUGCGGCUGUCAUGGGACUCGAUUUGUGCACACACAUAAAUCAAGUUAAUGACAAAAAA___ACACACGAAAC_________
..........(((.((..(((.......)))..)).)))((((((..((((.((((((((......)))))))).)))).))))))............................ (-20.61 = -21.03 +   0.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:37:21 2011