| Sequence ID | dm3.chr3R |
|---|---|
| Location | 19,010,539 – 19,010,656 |
| Length | 117 |
| Max. P | 0.645013 |
| Location | 19,010,539 – 19,010,656 |
|---|---|
| Length | 117 |
| Sequences | 5 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 76.49 |
| Shannon entropy | 0.38776 |
| G+C content | 0.61802 |
| Mean single sequence MFE | -43.42 |
| Consensus MFE | -21.12 |
| Energy contribution | -21.76 |
| Covariance contribution | 0.64 |
| Combinations/Pair | 1.27 |
| Mean z-score | -2.03 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.32 |
| SVM RNA-class probability | 0.645013 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 19010539 117 + 27905053 CGGAGGAGGCAUCACCAUUGUGGCCGGUUCCGGGAACCAUGGCGGCGCUGGUGGAGGAGGAGGAGGCGGCGGUAGACACAAGUCGAAUCCCCGCCGUCUUAGCAUCAAGCAGGAUCA ..((....((.((((((.(((.((((((((...)))))..))).))).))))))..((.(..((((((((((..(((....)))......))))))))))..).))..))....)). ( -48.80, z-score = -1.63, R) >droAna3.scaffold_13340 15312681 93 - 23697760 CGGCGGUGGAGCCACCAUUGUCUCCGGCCU---------------------GGGAAACGGAGGUGGCCGGCAUAAGCA---GUCGAAUCCCCGCCGAUUGAGCAUCAAGCAGGACCA ((((((.(((((((((.((((.(((.....---------------------.))).)))).))))))((((.......---))))..))))))))).....((.....))....... ( -40.20, z-score = -1.71, R) >droYak2.chr3R 19879445 108 + 28832112 CGGUGGAGGCAUCACCAUUGUGGCAGGUUCUGGGAACCA---------UGGCGGCGGUGGUGGUGGUGGCGGCAGACACAAGUCGAAUCCCCGCCGUUUGAGCAUCAAGCAGGAUCA .(((((.((((((((((((((.((.(((((...))))).---------..)).))))))))))))....((((........))))...)))))))(((((.....)))))....... ( -47.30, z-score = -2.18, R) >droSec1.super_0 19373854 99 + 21120651 CGGAGGAGGCAUCACCAUUGUGGCCGGUUC------------------UGGUGGUGGAGGAGGAGGCGGCGGUAGACACAAGUCGAAUCCCCGCCGACUUAGCAUCAAGCAGGAUCA .......(((..(((....))))))(((((------------------((.(((((...(((..(((((.((..(((....)))....)))))))..)))..)))))..))))))). ( -40.40, z-score = -2.32, R) >droSim1.chr3R 18823271 99 + 27517382 CGGAGGAGGCAUCACCAUUGUGGCCGGUUC------------------UGGUGGUGGAGGAGGAGGCGGCGGUAGACACAAGUCGAAUCCCCGCCGACUUAGCAUCAAGCAGGAUCA .......(((..(((....))))))(((((------------------((.(((((...(((..(((((.((..(((....)))....)))))))..)))..)))))..))))))). ( -40.40, z-score = -2.32, R) >consensus CGGAGGAGGCAUCACCAUUGUGGCCGGUUC__________________UGGUGGAGGAGGAGGAGGCGGCGGUAGACACAAGUCGAAUCCCCGCCGACUUAGCAUCAAGCAGGAUCA .......(((..(((....))))))(((((.............................(((..(((((.((..(((....)))....)))))))..))).((.....)).))))). (-21.12 = -21.76 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:37:19 2011