| Sequence ID | dm3.chr3R |
|---|---|
| Location | 18,992,966 – 18,993,060 |
| Length | 94 |
| Max. P | 0.715302 |
| Location | 18,992,966 – 18,993,060 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 66.30 |
| Shannon entropy | 0.62038 |
| G+C content | 0.32565 |
| Mean single sequence MFE | -14.53 |
| Consensus MFE | -5.53 |
| Energy contribution | -5.28 |
| Covariance contribution | -0.25 |
| Combinations/Pair | 1.62 |
| Mean z-score | -1.53 |
| Structure conservation index | 0.38 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.49 |
| SVM RNA-class probability | 0.715302 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 18992966 94 - 27905053 ---------ACAUUAUCUACCCAACUAUUACAUAUUAAAUUUUCUUGUAAAAACGCUUGAGUUUUCCCAUGUUUUUUUUUU--GUGUUCACCUCAAGUGAGCAUC ---------....................................((..(((((......)))))..))............--((((((((.....)))))))). ( -12.20, z-score = -1.46, R) >droSim1.chr3R 18804696 92 - 27517382 ---------ACCAUUUUUACCCAACUAUUACAUAAUAACUUUUCUUGUAAAAACGUUUGGGUUUUC-CAUGUUUUUAUUUU---UGUUCGCCUCAAGUGAGCAUC ---------..(((....(((((((..(((((.............)))))....).))))))....-.)))..........---(((((((.....))))))).. ( -15.02, z-score = -2.03, R) >droSec1.super_0 19356945 91 - 21120651 ---------ACCAUUUUUACCCAACUAUUACAUAUUAAAUUUUCUUGUAAAAACGCUUGGGUUUUCUCAUGUUUU--UUUU---UGUUCGCCUCAAGUGAGCAUC ---------..(((....(((((((..(((((.............)))))....).))))))......)))....--....---(((((((.....))))))).. ( -14.42, z-score = -1.99, R) >droYak2.chr3R 19861559 90 - 28832112 ---------AUAAUAUUUACGCAACUAUUAUAUAUUGCAUUUUCUUGUAAAAACGCUUGGGGUUUCCCCCAUUUUCU------CAGCUUUCCUCAAGUGAGCAUC ---------...........((............(((((......)))))...(((((((((...............------.......))))))))).))... ( -17.15, z-score = -2.19, R) >droEre2.scaffold_4820 1397793 96 + 10470090 ---------ACAAUAUUUACCCAACCUUUAUAUAUUGCAUUUUCUUGUAAAAACGCUUGGGUUUUUCCCAUUUUUUUGUUUUCUUGCUUUCCCCAAGUGAGCAUC ---------.........(((((((.(((.....(((((......)))))))).).))))))..............(((((.((((.......)))).))))).. ( -13.50, z-score = -1.47, R) >droMoj3.scaffold_6540 5919701 93 + 34148556 GUAGUAAGAACGAGUUCUUCUU--UGAAUAUUUACUGGGUAUUGCGAUAUAGAUGCUC--AUUUCAUCUUGUUUUUUGUUUGUGUUUUGUUCUCAGU-------- ......(((((((((((.....--.))))......((((((((........)))))))--).........................)))))))....-------- ( -14.90, z-score = -0.02, R) >consensus _________ACAAUAUUUACCCAACUAUUACAUAUUAAAUUUUCUUGUAAAAACGCUUGGGUUUUCCCAUGUUUUUUUUUU___UGUUCUCCUCAAGUGAGCAUC ...........................(((((.............)))))...((((((((..............................))))))))...... ( -5.53 = -5.28 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:37:16 2011