| Sequence ID | dm3.chr3R |
|---|---|
| Location | 18,988,191 – 18,988,280 |
| Length | 89 |
| Max. P | 0.629889 |
| Location | 18,988,191 – 18,988,280 |
|---|---|
| Length | 89 |
| Sequences | 8 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 66.67 |
| Shannon entropy | 0.64150 |
| G+C content | 0.51669 |
| Mean single sequence MFE | -25.84 |
| Consensus MFE | -9.11 |
| Energy contribution | -9.51 |
| Covariance contribution | 0.41 |
| Combinations/Pair | 1.42 |
| Mean z-score | -1.52 |
| Structure conservation index | 0.35 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.29 |
| SVM RNA-class probability | 0.629889 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 18988191 89 + 27905053 UCUUUAUGGUCUGCCAGAGAACUGGCCCCCAUCCAAAUGGCCAACAGCUGUGUGAACAGCGGGAAUGGCGUGAAAAUAAUGCAAAUAAU--------- ...((((..(((((((......(((((...........)))))...(((((....))))).....))))).))..))))..........--------- ( -24.20, z-score = -0.78, R) >droSim1.chr3R 18799938 89 + 27517382 UCUAGAUGGUCUGCCAGAGAACUGGCCACCAUCCAAAUGGCCAACAGCUGCGAGAACAGCGGGAAUGGCGUGAAAAUAAUGCAAAUAAU--------- ....((((((..(((((....))))).))))))......((((.(.((((......)))).)...))))....................--------- ( -26.60, z-score = -1.94, R) >droSec1.super_0 19352151 89 + 21120651 UCUAUAUGGUCUGCCAGAGAACUGGCCACCAUCCAAAUGGCCAACAGCUGCGAGAACAGCGGGAAUGGCGUGAAAAUAAUGCAAAUAAU--------- .....(((((..(((((....))))).))))).......((((.(.((((......)))).)...))))....................--------- ( -23.00, z-score = -0.82, R) >droYak2.chr3R 19856423 98 + 28832112 AGUUUCUGGUCUGCCAGAGAACUGGCCCCCAUCCAAAUGGCCAACAGCUGCGCGAGCAGCGGGAAACACGGGAAAGGCGUGAAAAUAAUGAACAUAAU (((((((((....)))))).))).((((((..((....))((....(((((....))))).))......)))...))).................... ( -31.90, z-score = -1.65, R) >droEre2.scaffold_4820 1391890 89 - 10470090 ACUUUCUGGUCUGCCAGAGAACUGGCCCCCGUCCAAAUGGCCAACAGCUGCGAGAACAGCGGGAAAGCCGUGAAAAUAAUGCAAAUAAU--------- ..(((((((....)))))))...(((.((((.((....)).)....((((......)))))))...)))....................--------- ( -24.80, z-score = -1.11, R) >dp4.chr2 21114250 72 - 30794189 GGUUUCUGGUCUGCUGAAGAGCUGGCCAUCGGCCAAAAGCGCAACAGCUGCGACCACAGCGGAACAGGCGCG-------------------------- ((((..(((((.(((....))).)))))..))))....((((.....((((.......)))).....)))).-------------------------- ( -29.10, z-score = -1.36, R) >droPer1.super_0 10801626 72 + 11822988 GGUUUCUGGUCUGCUGAAGAGCUGGCCAUCGGCCAAACGCGCAACAGCUGCGACCACAGCGGAACAGGCGCG-------------------------- ((((..(((((.(((....))).)))))..))))...(((((.....((((.......)))).....)))))-------------------------- ( -30.10, z-score = -1.58, R) >droVir3.scaffold_13047 7954419 84 + 19223366 UAUGCCAAGUACAC-ACAAAUCAGGCCGAAAUACAACA--CAAACAGCCGC--CAGCAGCGGCAAUUAAAGGAAAGUAUUUCACUUAUU--------- ...(((..((....-....))..))).(((((((....--......(((((--.....)))))..((....))..))))))).......--------- ( -17.00, z-score = -2.93, R) >consensus UCUUUCUGGUCUGCCAGAGAACUGGCCACCAUCCAAAUGGCCAACAGCUGCGAGAACAGCGGGAAAGGCGUGAAAAUAAUGCAAAUAAU_________ .....((((...((((......))))..))))..............((((......))))...................................... ( -9.11 = -9.51 + 0.41)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:37:16 2011