| Sequence ID | dm3.chr3R |
|---|---|
| Location | 18,980,809 – 18,980,950 |
| Length | 141 |
| Max. P | 0.537742 |
| Location | 18,980,809 – 18,980,950 |
|---|---|
| Length | 141 |
| Sequences | 11 |
| Columns | 149 |
| Reading direction | reverse |
| Mean pairwise identity | 75.70 |
| Shannon entropy | 0.50338 |
| G+C content | 0.36535 |
| Mean single sequence MFE | -30.00 |
| Consensus MFE | -17.45 |
| Energy contribution | -17.61 |
| Covariance contribution | 0.16 |
| Combinations/Pair | 1.13 |
| Mean z-score | -0.96 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.537742 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 18980809 141 - 27905053 ---GAUGGUAAUAGCACCAAUAAAAUGUUGGUAGACGCUUUGGAAAACACAACAAAUUUCAGCAAAUUUUUAAGUUUCUCACGACCCCUGGACAGUCGUUGUGAGUAUCCCAGAGUCCUGACAU-GCGUACGUCUAAGUUAUACA---- ---....(((.((((((((((.....))))))(((((((((((.((((.....((((((....))))))....))))((((((((..((....))..))))))))....)))))))....((..-..))..))))..))))))).---- ( -32.60, z-score = -0.83, R) >droMoj3.scaffold_6540 20073386 133 + 34148556 GAUGGUAAUAAUACAACCAACAAAAUGUUGGUAGAUGCUUUGGAAAAUACAACUAAUUCCAGCAAAAUCUUAAAUAUAUCACUACCACUGGACAGCCAUCGUGAGUAAUAUAUACUUUACAUUG-AUUUUUGCA--------------- ((((((.........((((((.....))))))((((...((((((...........))))))....))))........................))))))(((((((.....))).))))....-.........--------------- ( -24.80, z-score = -1.30, R) >droVir3.scaffold_13047 17608334 130 - 19223366 GAUGGUAAUAAUACAACCAACAAAAUGUUUGUAGAUGCUUUGGAAAAUACAACUAAUUCCAGCAAAAUCUUAAAUAUCUCACUACCACUGGACAGCCAUCGUGAGUAAUAUAU---UUACACAG-AUCUUUUCA--------------- ((((((..................(((((((.((((...((((((...........))))))....)))))))))))....(((....)))...))))))(((((((...)))---))))....-.........--------------- ( -21.20, z-score = -0.89, R) >droWil1.scaffold_181130 14943679 136 - 16660200 ---GAUGGUAAUAGUACCAAUAAAAUGUUGGUAGAUGCUUUGGAAAAUACAUCAAAUUCCAGCAAGUUUUUAAAUUUCUCACGACCCCUGGAUAGUCGUUGUGAGUAUAUACAAG-AAAUAUGUACAAUUUAUUUAUACA--------- ---..(((((....)))))(((((.((((((..((((..((....))..)))).....))))))......((((((..(((((((..((....))..)))))))(((((((....-...))))))))))))))))))...--------- ( -29.60, z-score = -1.77, R) >droAna3.scaffold_13340 15281980 127 + 23697760 ---GAUUGUAAUAGUACCAAUAAAAUGUUGGUAGAUGCUUUGGGAAACACAACAAAUUCCAGCAAAUUUUUAAGUUUCUCACGACCCGUGGACAGUCGUUGUGAGUAUU--GGGUCACAGAUAUAGCGAAUA----------------- ---..((((.(((...((((((...((((((..(((...((((....).)))...))))))))).............((((((((.(.......)..))))))))))))--))........))).))))...----------------- ( -26.60, z-score = -0.04, R) >droPer1.super_0 2569047 149 - 11822988 GAACAUGGUAAUAGUACCAAUAAAAUGUUGGUAGAUGCUUUGGAAAAUACAAGAAAUUCCAGCAAAUUAUUAAAUUUCUCACGACCCCUGGACAGUCGUUGUGAGUAUUUUGGGGUGAACCUAUAAGACAUAAAUAUGUACAAUAUAUU .....(((((((..(((((((.....)))))))..((((..((((...........)))))))).))))))).....((((((((..((....))..))))))))(((.((((((....))).....((((....)))).))).))).. ( -32.40, z-score = -1.12, R) >dp4.chr2 8756325 149 - 30794189 GAACAUGGUAAUAGUACCAAUAAAAUGUUGGUAGAUGCUUUGGAAAAUACAAGAAAUUCCAGCAAAUUAUUAAAUUUCUCACGACCCCUGGACAGUCGUUGUGAGUAUUUUGGGGUGAACCUAUAAGACAUAAAUAUGUACAAUAUAUU .....(((((((..(((((((.....)))))))..((((..((((...........)))))))).))))))).....((((((((..((....))..))))))))(((.((((((....))).....((((....)))).))).))).. ( -32.40, z-score = -1.12, R) >droEre2.scaffold_4820 1384394 141 + 10470090 ---GAUGGUAAUAGCACCAAUAAAAUGUUGGUAGACGCUUUGGAAAACACAACAAAUUUCAGCAAAUUUUUAAGUUUCUCACGACCCCUGGACAGUCGUUGUGAGUAUCCCAAAGUCCUGACAG-GCGUUCGCCUAAGUUAUACA---- ---....(((.((((((((((.....))))))....(((((((.((((.....((((((....))))))....))))((((((((..((....))..))))))))....)))))))......((-((....))))..))))))).---- ( -34.60, z-score = -1.39, R) >droYak2.chr3R 19848451 141 - 28832112 ---GAUGGUAAUAGCACCAAUAAAAUGUUGGUAGACGCUUUGGAAAAUACAACAAAUUUCAGCAAAUUUUUAAGUUUCUCACGACCCCUGGACAGUCGUUGUGAGUAUCCAAGAGUCCUGACAU-GCGUACGCCUAAGUUAUGCA---- ---..((((......)))).....((((..(..(((..((((((.........((((((....))))))........((((((((..((....))..))))))))..)))))).))))..))))-((((((......).))))).---- ( -33.50, z-score = -0.99, R) >droSec1.super_0 19344700 141 - 21120651 ---GAUGGUAAUAGCACCAAUAAAAUGUUGGUAGACGCUUUGGAAAACACAACAAAUUUCAGCAAAAUUUUAAGUUUCUCACGACCCCUGGACAGUCGUUGUGAGUAUCCCAGAGUCCUGACAU-GCGUACGCCUAAGUUAUACA---- ---...(((....((((((((.....))))))....(((((((..........((((((.....)))))).......((((((((..((....))..))))))))....)))))))........-))....)))...........---- ( -30.50, z-score = -0.29, R) >droSim1.chr3R 18791893 141 - 27517382 ---GAUGGUAAUAGCACCAAUAAAAUGUUGGUAGACGCUUUGGAAAACACAACAAAUUUCAGCAAAAUUUUAAGUUUCUCACGACCCCUGGACAGUCGUUGUGAGUAUCCCAGAGUCCUGACAU-GCUUACGCCUAAGUUAUACA---- ---...(((...(((((((((.....))))))....(((((((..........((((((.....)))))).......((((((((..((....))..))))))))....)))))))........-)))...)))...........---- ( -31.80, z-score = -0.87, R) >consensus ___GAUGGUAAUAGCACCAAUAAAAUGUUGGUAGAUGCUUUGGAAAAUACAACAAAUUCCAGCAAAUUUUUAAGUUUCUCACGACCCCUGGACAGUCGUUGUGAGUAUCCCAGAGUCCAGACAU_GCGUAUGCCUAAGUUAUACA____ ...............((((((.....))))))....(((..((((...........)))))))..............((((((((..((....))..))))))))............................................ (-17.45 = -17.61 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:37:15 2011