| Sequence ID | dm3.chr3R |
|---|---|
| Location | 18,979,582 – 18,979,674 |
| Length | 92 |
| Max. P | 0.535710 |
| Location | 18,979,582 – 18,979,674 |
|---|---|
| Length | 92 |
| Sequences | 10 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 58.41 |
| Shannon entropy | 0.76567 |
| G+C content | 0.46043 |
| Mean single sequence MFE | -22.72 |
| Consensus MFE | -7.87 |
| Energy contribution | -8.46 |
| Covariance contribution | 0.59 |
| Combinations/Pair | 1.60 |
| Mean z-score | -0.98 |
| Structure conservation index | 0.35 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.535710 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 18979582 92 + 27905053 CAUCGGAAUCCCCUU----UCCCAUCCCUAUCCGAUUU-UCAGCCAAAGGGCCACUUGUGGUC---CUGUUGCUGAUAAAACAUG----UUCUAGGUGUGGGUG--------------- ....((.....))..----.((((..((((........-(((((...(((((((....)))))---))...))))).........----...))))..))))..--------------- ( -30.45, z-score = -2.69, R) >droAna3.scaffold_13340 15280780 96 - 23697760 CAUCAAAAUCCCCAUAAACCACCUCUACCAUCCGAUUU-UCAGCCAAAGGGCCAUUUGUGGUC---CUGUUGCUGGUAAAACAUA----UUCUAGGUGUGGGUG--------------- ..........((((.....(((((..............-(((((...(((((((....)))))---))...))))).........----....)))))))))..--------------- ( -27.33, z-score = -1.93, R) >droPer1.super_0 2567793 89 + 11822988 -----------CAAUGGGCGCGUGUUAAUAUCCGAUCUCUCAGCCAAAGGGCCAGUUGUGGCCGCCCUGUUGCUGAUUGAACAUA----UUCUAGGUAUGUGUU--------------- -----------.....(((((((((((((((..(.((..(((((...(((((..((....)).)))))...)))))..)).))))----))...))))))))))--------------- ( -22.90, z-score = 0.39, R) >dp4.chr2 8755072 89 + 30794189 -----------CAAUGGGCGCGUGUUAAUAUCCGAUCUCUCAGCCAAAGGGCCAGUUGUGGCCGCCCUGUUGCUGAUUGAACAUA----UUCUAGGUAUGUGUU--------------- -----------.....(((((((((((((((..(.((..(((((...(((((..((....)).)))))...)))))..)).))))----))...))))))))))--------------- ( -22.90, z-score = 0.39, R) >droEre2.scaffold_4820 1383186 78 - 10470090 --------UCCUCUU----UC------CUAUCCGAUUU-UCAGCCAAAGGGCCACUUGUGGUC---CUGUUGCUGAUAAAACAUG----UUCUAGGUGUGGGUG--------------- --------.......----..------.(((((.....-(((((...(((((((....)))))---))...)))))....((((.----......)))))))))--------------- ( -23.90, z-score = -2.28, R) >droYak2.chr3R 19847243 86 + 28832112 UAUCGGAAUCCCCUU----UC------CUAUCCGAUUU-UCAGCCAAAGGGCCACUUGUGGUC---CUGUUGCUGAUAAAACAUG----UUCUAGGUGUGUGUG--------------- .((((((........----..------...))))))..-(((((...(((((((....)))))---))...)))))....(((..----(.....)..)))...--------------- ( -26.22, z-score = -2.99, R) >droSec1.super_0 19343477 92 + 21120651 CAUCGGAAUCCCCUU----UCCCUUUCCUAUCCGAUUU-UCAGCCAAAGGGCCACUUGUGGUC---CUGUUGCUGAUAAAACAUG----UUCUAGGUGUGGGUG--------------- ....((((......)----)))......(((((.....-(((((...(((((((....)))))---))...)))))....((((.----......)))))))))--------------- ( -27.30, z-score = -1.90, R) >droSim1.chr3R 18790669 92 + 27517382 CAUCGGAAUCCCCUU----UCCCUUUCCUAUCCGAUUU-UCAGCCAAAGGGCCACUUGUGGUC---CUGUUGCUGAUAAAACAUG----UUCUAGGUGUGGGUG--------------- ....((((......)----)))......(((((.....-(((((...(((((((....)))))---))...)))))....((((.----......)))))))))--------------- ( -27.30, z-score = -1.90, R) >apiMel3.GroupUn 43112270 87 + 399230636 -----------UGUGGAAAUUCUAGUACUACUCACAUU-ACAAUUCUGAGAAUAUUUGUCCUG-----GUUACUGAGAAAGAGUAGAGAUUAUAACAACGGGCA--------------- -----------(((......(((....((((((.....-...((((...)))).(((.((..(-----....).)).)))))))))))).....))).......--------------- ( -9.60, z-score = 2.28, R) >triCas2.ChLG8 809517 107 - 15773733 ------------CAUCCUAACCUUUCGAUCUCCGUAGUUAGCGCCCCGCCAUGAUGUAAGUUGUCCAUGACAUUAGAAAUUUGUUAAAUACCUAAUCAUCUCUCUUUCACAUGUUAUUA ------------....(((((....((.....))..)))))........((((.((.(((..(...((((..((((..(((.....)))..))))))))..).))).))))))...... ( -9.30, z-score = 0.88, R) >consensus ________UCCCCUU____UCCCUUUACUAUCCGAUUU_UCAGCCAAAGGGCCACUUGUGGUC___CUGUUGCUGAUAAAACAUG____UUCUAGGUGUGGGUG_______________ ...................................(((.(((((...(((((((....)))))...))...))))).)))....................................... ( -7.87 = -8.46 + 0.59)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:37:14 2011