| Sequence ID | dm3.chr3R |
|---|---|
| Location | 18,938,306 – 18,938,405 |
| Length | 99 |
| Max. P | 0.525400 |
| Location | 18,938,306 – 18,938,405 |
|---|---|
| Length | 99 |
| Sequences | 3 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 79.93 |
| Shannon entropy | 0.29250 |
| G+C content | 0.53293 |
| Mean single sequence MFE | -23.03 |
| Consensus MFE | -20.49 |
| Energy contribution | -20.60 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.05 |
| Mean z-score | -0.81 |
| Structure conservation index | 0.89 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.525400 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 18938306 99 - 27905053 GACCAGGCUGCACUUCAUCCGCGGAGGCGCCUGCUAUUGCAAGAGCAAACACAGAAACAGAUUCUAAAACAGAAACAGAAACUGGAUCCCAGAGCCAAC ...(((((.((.((((......)))))))))))...((((....)))).....((..(((.((((...........)))).)))..))........... ( -22.50, z-score = -0.97, R) >droYak2.chr3R 19804929 96 - 28832112 GACCAGGCUGCACUUCAUCCGCGGAGGCGCCUGCGAUUGCAAGAGCAAACACACAGAAGCAGAUUCACA---AAACAGAAACUGGAGUCCAGAGUCAAC ((((((((.((.((((......))))))))))).(.((((....)))).).........(((.(((...---.....))).))).........)))... ( -23.40, z-score = -0.45, R) >droEre2.scaffold_4820 1341820 80 + 10470090 GACCAGGCUGCACUUCAUCCGCGGAGGCGCCUGCGAUUGCAAGAGCAAG---------------UCA-A---AAACAGAAACUGGAUCCCAGAGCCAAC .....((((((.(((((..(((((......)))))..)).))).))...---------------...-.---.........((((...))))))))... ( -23.20, z-score = -1.02, R) >consensus GACCAGGCUGCACUUCAUCCGCGGAGGCGCCUGCGAUUGCAAGAGCAAACACA_A_A___A___UCA_A___AAACAGAAACUGGAUCCCAGAGCCAAC .....((((((.(((((..(((((......)))))..)).))).))...................................((((...))))))))... (-20.49 = -20.60 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:37:13 2011