Locus 11141

Sequence ID dm3.chr3R
Location 18,932,473 – 18,932,582
Length 109
Max. P 0.521670
window15311

overview

Window 1

Location 18,932,473 – 18,932,582
Length 109
Sequences 3
Columns 109
Reading direction forward
Mean pairwise identity 92.33
Shannon entropy 0.10721
G+C content 0.33234
Mean single sequence MFE -18.60
Consensus MFE -17.86
Energy contribution -17.53
Covariance contribution -0.33
Combinations/Pair 1.11
Mean z-score -0.91
Structure conservation index 0.96
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.05
SVM RNA-class probability 0.521670
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3R 18932473 109 + 27905053
ACUUUUUCAUUGUGAAGGCUUAUUGAAUUUGAGAAAAACCAACCGAAAUCAACGACAAAGUAAAUUUUACAGGACCAACUAAGCUUUAAAUGGGGAAGAAAGUACAAUA
.((((..((((...(((((((((((...(((........)))(((((((..((......))..)))))...))..))).)))))))).))))..))))........... ( -21.20, z-score =  -1.76, R)
>droSec1.super_0 19296416 108 + 21120651
ACUUUUUCAUUGCGAAAGCUUAUUGAAUUUGCGAAAAAUCAACCAAAAUCAACGACAAAGUGAAAUUUACAGGACCAACUAAGCUUUAAAUGGUGAAGAAAGGACA-UA
.((((.(((((...((((((((((((.((((.((....))...)))).)))).......((((...)))).........)))))))).))))).))))........-.. ( -17.60, z-score =  -0.80, R)
>droSim1.chr3R 18741792 108 + 27517382
ACUUUUUCAUUGCGAAGGCUUAUUGAAUUUGCGAAAAACCAACCAAAAUCAACGACAAAGUGAAUUUUACAGGACCAACUAAGCUUUAAAUGGCGCAGAAAGGAAA-UA
.((((((((..((....))....))))(((((......((....(((((..((......))..)))))...)).........(((......))))))))))))...-.. ( -17.00, z-score =  -0.16, R)
>consensus
ACUUUUUCAUUGCGAAGGCUUAUUGAAUUUGCGAAAAACCAACCAAAAUCAACGACAAAGUGAAUUUUACAGGACCAACUAAGCUUUAAAUGGCGAAGAAAGGACA_UA
.((((..((((...((((((((((((.((((............)))).)))).......((((...)))).........)))))))).))))..))))........... (-17.86 = -17.53 +  -0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:37:12 2011