| Sequence ID | dm3.chr3R |
|---|---|
| Location | 18,929,084 – 18,929,185 |
| Length | 101 |
| Max. P | 0.698232 |
| Location | 18,929,084 – 18,929,185 |
|---|---|
| Length | 101 |
| Sequences | 5 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 68.99 |
| Shannon entropy | 0.54620 |
| G+C content | 0.46221 |
| Mean single sequence MFE | -22.82 |
| Consensus MFE | -11.26 |
| Energy contribution | -11.58 |
| Covariance contribution | 0.32 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.29 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.44 |
| SVM RNA-class probability | 0.698232 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 18929084 101 + 27905053 AAAAAAGAGUAGAGGG-AUAUAUGGCGCUCCAAGUGGAGUUUAAUAUGCCGUAGAUCAAAGUCAGGCCGUAAACGAGAUCCCAUUUGCCAC-ACAC-ACAGACA-------------- ......(.((((((((-((.(((((((((((....))))).............(((....)))..))))))......))))).))))))..-....-.......-------------- ( -24.80, z-score = -2.00, R) >droSim1.chr3R 18738464 110 + 27517382 AAAAAAGAGUGGAGGAUAUAUAAGGCGCUCCAAGUGGAGUUUAAUAUGCCGUAGAUCAAAGUCAGGCCGUAAACGAGAUCCCAUUUGCCAC-ACAC-ACCAACACACAGACA------ ........((((.((((.......(((((((....))))).......(((...(((....))).))).)).......))))......))))-....-...............------ ( -21.24, z-score = -0.45, R) >droYak2.chr3R 19794940 112 + 28832112 AAAAAAGAGUGGAGCAUAUAUAAAGCGCUCCAAGUGGAGUUUAAUAUGCCGUAGAUCAAAGUCAGGCCGUAAACGAGAUGCCAUUUACGACCACGCCACACACACACACACA------ ........((((.((((((.(((...(((((....))))))))))))))(((.(((....))).((.((((((.(......).)))))).))))))))).............------ ( -26.80, z-score = -2.54, R) >droEre2.scaffold_4820 1332380 103 - 10470090 --------------AAAAAAGAGAGCGCUCCAAGUGGAGUUUAAUACGCCGUAGAUCAAAGUCAGGCCGUAAAAGGGAUCCCAUUUGCCACGCCGC-ACACACACACACACGCACACA --------------..........(((((((....))))).......((....(((....))).(((.(((((.((....)).)))))...)))))-..............))..... ( -22.00, z-score = -0.77, R) >droAna3.scaffold_13340 15229434 96 - 23697760 AGAAGAGAGCCCGGAAAAGA-AGACUACCUCGAGUGGAGGUUAAUAUGCCAUAGAUCAAAGUCAAGCUCUAGAUGGAAACCCAUUUGCCACCAACCC--------------------- .....(((((..((......-.....(((((.....))))).......))...(((....)))..)))))((((((....))))))...........--------------------- ( -19.27, z-score = -0.71, R) >consensus AAAAAAGAGUGGAGAAAAUAUAAAGCGCUCCAAGUGGAGUUUAAUAUGCCGUAGAUCAAAGUCAGGCCGUAAACGAGAUCCCAUUUGCCAC_ACAC_ACACACACACA_AC_______ ..............................(((((((.((((..((((((...(((....))).))).)))....)))).)))))))............................... (-11.26 = -11.58 + 0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:37:11 2011