| Sequence ID | dm3.chr3R |
|---|---|
| Location | 18,910,048 – 18,910,138 |
| Length | 90 |
| Max. P | 0.950791 |
| Location | 18,910,048 – 18,910,138 |
|---|---|
| Length | 90 |
| Sequences | 12 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 75.98 |
| Shannon entropy | 0.45493 |
| G+C content | 0.47900 |
| Mean single sequence MFE | -28.27 |
| Consensus MFE | -16.06 |
| Energy contribution | -16.52 |
| Covariance contribution | 0.46 |
| Combinations/Pair | 1.33 |
| Mean z-score | -2.00 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.56 |
| SVM RNA-class probability | 0.950791 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 18910048 90 - 27905053 --------GCGCCGCUAGAGAGCACCACCAAUUAAAUGGGCUUUAAUAAGCUCAGCCACUUAAACAGCCAGA-------AAUCUGGC-AAAGAGGUUAAACGGCUG------------- --------..((((((....)))...(((.......(((((((....)))))))............(((((.-------...)))))-.....))).....)))..------------- ( -28.00, z-score = -2.53, R) >droSim1.chr3R 18719120 90 - 27517382 --------GCGCCGCUGGAGAGCACCACCAAUUAAAUGGGCUUUAAUAAGCUCAGCCACUUAAACAGCCAGA-------AAUCUGGC-AAAGAGGUUAAACGGGUG------------- --------.(((((((..(((((.(((.........))))))))....)))..((((.(((.....(((((.-------...)))))-.))).)))).....))))------------- ( -27.50, z-score = -1.81, R) >droSec1.super_0 19273207 90 - 21120651 --------GCGCCGCUGGAGAGCACCACCAAUUAAAUGGGCUUUAAUAAGCUCAGCCACUUAAACCGCCAGA-------AAUCUGGC-AAAGAGGUUAAACGGCUG------------- --------..((((((..(((((.(((.........))))))))....)))..((((.(((.....(((((.-------...)))))-.))).))))....)))..------------- ( -28.60, z-score = -2.16, R) >droYak2.chr3R 19775461 88 - 28832112 --------GCGCCGGUGGAGCAC--CACCAAUUAAAUGGGCUUUAAUAAGCCCAGCCACUUAAACAGCCAGA-------AAUCUGGC-AAAGAGGUUAAACGGCUG------------- --------..((((((((....)--))))........((((((....))))))((((.(((.....(((((.-------...)))))-.))).))))....)))..------------- ( -35.70, z-score = -4.42, R) >droEre2.scaffold_4820 1312084 94 + 10470090 --------GCGCCGGUGGAGCAC--CACCAAUUAAAUGGGCUUUAAUAAGCCCGGCCACUUAAACAGCCAGAAUCUGGCAAUCUGGC--AAGAGGUUAAACGGCUG------------- --------..((((((((....)--))))........((((((....))))))((((.(((.....((((((.........))))))--))).))))....)))..------------- ( -35.60, z-score = -2.83, R) >droAna3.scaffold_13340 15208126 96 + 23697760 CUUGCCGGGCGCCGCUGGAGGAGG--CCCAAUUAAAUGGGCUUUAAUAAGCUCAGCCACUUAAACAGUCAGA-------AAUCUGGC-AAAGAGGUUAAACGGCUG------------- ...(((((((...(((....((((--((((......))))))))....)))...)))((((.....(((((.-------...)))))-....))))....))))..------------- ( -37.00, z-score = -2.87, R) >dp4.chr2 3084239 96 - 30794189 CUCGGAAGGCGCCGCUAGAGAAC---CCCAAUUAAAUGGGCUUUAAUAAGCUCAGCCACUUAAGCAGUCAGA-------AAUCUGGCAAAAGAGGUUAAACGGCUG------------- .((....)).((((.(((((...---((((......))))))))).(((.(((.((.......)).(((((.-------...)))))....))).)))..))))..------------- ( -26.80, z-score = -0.94, R) >droPer1.super_7 3187241 96 + 4445127 CUCGGAAGGCGCCGCUAGAGAAC---CCCAAUUAAAUGGGCUUUAAUAAGCUCAGCCACUUAAGCAGUCAGA-------AAUCUGGCAAAAGAGGUUAAACGGCUG------------- .((....)).((((.(((((...---((((......))))))))).(((.(((.((.......)).(((((.-------...)))))....))).)))..))))..------------- ( -26.80, z-score = -0.94, R) >droWil1.scaffold_181130 14867782 96 - 16660200 CUUGCAAGGCGCCGCUAGAGACCA---CCAAUUAAAUGGGCUUUAAUAAGCUCAGCCACUUAAAUAGUCUGA-------AAUCUGGCGAAAAAGGUUAAAUGGCUA------------- ...((.....)).((((..((((.---.........(((((((....)))))))((((..............-------....))))......))))...))))..------------- ( -21.27, z-score = 0.31, R) >droVir3.scaffold_13047 17527054 91 - 19223366 --------GCGACACCCAAGUCG---CACAAUUAAAUGGGCUUUAAUAAGCCCAGACACUUAAAUAGUCAAA-------AAUCUGGC-AAAGAGGUUAAAGCUGCAGCAG--------- --------(((((......))))---).........(((((((....)))))))(((.(((.....((((..-------....))))-...))))))...((....))..--------- ( -24.60, z-score = -2.94, R) >droMoj3.scaffold_6540 19993002 100 + 34148556 --------GCGCCAGCCGAGCGC---AGUAAUUAAAUGGACUUUAAUAAGCCCAGCCACUUAAACAGUCAAA-------AAUCUGGC-AAAGAGGUUAAACUGCCGGCUCUGGAUGCAG --------((((((((((...((---(((........((.(((....))).))((((.(((...(((.....-------...)))..-.))).))))..)))))))))..))).))).. ( -29.70, z-score = -1.66, R) >droGri2.scaffold_15074 673369 79 + 7742996 --------GUGUCGCCAGAG-----------UUGAGCAA---UUAAUAAUCCCAACCACUCAAACAGUCAAA-------AAUCUGGC-AAAGAGGUUAAGCGGCAGCUG---------- --------.((((((....(-----------((((....---)))))......((((.((....(((.....-------...)))..-..)).))))..))))))....---------- ( -17.70, z-score = -1.22, R) >consensus ________GCGCCGCUAGAGAAC___ACCAAUUAAAUGGGCUUUAAUAAGCUCAGCCACUUAAACAGUCAGA_______AAUCUGGC_AAAGAGGUUAAACGGCUG_____________ ..........((((.......................((((((....))))))((((.(((.....((((.............))))..))).))))...))))............... (-16.06 = -16.52 + 0.46)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:37:10 2011