| Sequence ID | dm3.chr3R |
|---|---|
| Location | 18,899,488 – 18,899,547 |
| Length | 59 |
| Max. P | 0.500000 |
| Location | 18,899,488 – 18,899,547 |
|---|---|
| Length | 59 |
| Sequences | 4 |
| Columns | 59 |
| Reading direction | forward |
| Mean pairwise identity | 88.79 |
| Shannon entropy | 0.17140 |
| G+C content | 0.52448 |
| Mean single sequence MFE | -12.38 |
| Consensus MFE | -9.26 |
| Energy contribution | -8.45 |
| Covariance contribution | -0.81 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.85 |
| Structure conservation index | 0.75 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chr3R 18899488 59 + 27905053 CCAAAUGGUUGGGUUAAGUGUUUGCAUCCUGCUCCCUUAUCCUGCCCUGCCCCUCAUCC ......(((.((((((((.(...((.....)).).))))....)))).)))........ ( -12.10, z-score = -1.12, R) >droYak2.chr3R 19764012 54 + 28832112 CCAAGUGGUCGGGUUAAGUGUUUGCAUCCUGCUCCCUUAACCCGUUC-----CUCAUCC ....(.((.(((((((((.(...((.....)).).)))))))))..)-----).).... ( -18.50, z-score = -5.00, R) >droSec1.super_0 19262673 54 + 21120651 CCAAAUGGUUGGGUUAAGUGUUUGCAUCCUGCUCCCUUAUCCUGCUC-----CUCAUCG ......((..(((.((((.(...((.....)).).)))).)))...)-----)...... ( -8.70, z-score = -0.38, R) >droSim1.chr3R 18708286 54 + 27517382 CCAAAUGGUUGGGUUAAGUGUUUGCAUCCUGCUCCCUUAUCCUGCCC-----CUCAUCG ......((..(((.((((.(...((.....)).).)))).)))..))-----....... ( -10.20, z-score = -0.91, R) >consensus CCAAAUGGUUGGGUUAAGUGUUUGCAUCCUGCUCCCUUAUCCUGCCC_____CUCAUCC ......((.((((.((((.(...((.....)).).)))).))))))............. ( -9.26 = -8.45 + -0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:37:09 2011