| Sequence ID | dm3.chr3R |
|---|---|
| Location | 18,898,896 – 18,898,986 |
| Length | 90 |
| Max. P | 0.687196 |
| Location | 18,898,896 – 18,898,986 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 90 |
| Reading direction | forward |
| Mean pairwise identity | 87.16 |
| Shannon entropy | 0.23187 |
| G+C content | 0.51576 |
| Mean single sequence MFE | -29.52 |
| Consensus MFE | -22.10 |
| Energy contribution | -23.00 |
| Covariance contribution | 0.90 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.75 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.42 |
| SVM RNA-class probability | 0.687196 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 18898896 90 + 27905053 CGCUGCCGUUAGCCGGCUCGAGCAUUGCGGCAGCUGAGUUAUGCCAGCACUGGGCCAUAAAAGCUGGCUUAAAGGCUGAUAUUUCAAUAC .((((((((..((((...)).))...))))))))((((.(((..((((..(((((((.......)))))))...))))))).)))).... ( -33.40, z-score = -1.26, R) >droSim1.chr3R 18707661 74 + 27517382 CGAUGCCGUUAG--------------GCGGCAACGCA--UAACUCAGCACUGGGCCAUAAAAGCUGGCUUAAAGGCUGAUAUUUCAAUCC .(((...((((.--------------(((....))).--))))(((((..(((((((.......)))))))...))))).......))). ( -25.50, z-score = -2.65, R) >droSec1.super_0 19262119 88 + 21120651 CGAUGCCGUUAGGCGGCUCGAGCAUUGCGGCAACGCA--UAACUCAGCACUGGGCAAUAAAAGCUGGCUUAAAGGCUGAUAUUUCAAUCC .((((((.((((((.(((.(((...((((....))))--...))))))....(((.......))).)))))).)))(((....)))))). ( -30.00, z-score = -2.00, R) >droYak2.chr3R 19763276 88 + 28832112 CGAUGCCGUUAGGUGGCUGGAGCAUUGCGGCAACGCA--UAACUCAGCACUGGGCCAUAAAAGCUGGCUUAAAGGCUGAUAUUUCAAUCC .((((((....((((.(((.((...((((....))))--...)))))))))((((((.......))))))...)))(((....)))))). ( -28.90, z-score = -1.26, R) >droEre2.scaffold_4820 1301240 88 - 10470090 CGACGCCGUUAGGUGGCUCGAGCAUUGCGGCAACGCA--UAACUCAGCACUGGGCCAUAAAAGCUGGCUUAAAGGCUGAUAUUUCAAUCC ...((((....))))(((.(((...((((....))))--...))))))..(((((((.......)))))))..(..(((....)))..). ( -29.80, z-score = -1.90, R) >consensus CGAUGCCGUUAGGCGGCUCGAGCAUUGCGGCAACGCA__UAACUCAGCACUGGGCCAUAAAAGCUGGCUUAAAGGCUGAUAUUUCAAUCC ((.((((((......((....))...)))))).))........(((((..(((((((.......)))))))...)))))........... (-22.10 = -23.00 + 0.90)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:37:09 2011