| Sequence ID | dm3.chr3R |
|---|---|
| Location | 18,863,010 – 18,863,114 |
| Length | 104 |
| Max. P | 0.516318 |
| Location | 18,863,010 – 18,863,114 |
|---|---|
| Length | 104 |
| Sequences | 5 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 89.80 |
| Shannon entropy | 0.17332 |
| G+C content | 0.51434 |
| Mean single sequence MFE | -23.25 |
| Consensus MFE | -17.60 |
| Energy contribution | -18.28 |
| Covariance contribution | 0.68 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.76 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.516318 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 18863010 104 + 27905053 GCUGCCUACUCCUUUCCAUUUGCCCAAUCUUCCCAAUCUGCGGUGGCAAGCUAUAAAGAUAGCGAUACUCGAGUGUUCCACUGCGAGCCCCUUAAUUGUCAAAA ..................((((..((((........((.(((((((...(((((....)))))(((((....))))))))))))))........)))).)))). ( -21.19, z-score = -0.89, R) >droSim1.chr3R 18677496 99 + 27517382 GCUGCCUCCUCCUUUCCAUUUGCCA-----UCCCUAUCUGCGGUGGCAAGCUAUAAAGAUAGCGAUACUUGAGCGUCCCGCUGCGAGCCCCUUAAUUGUCAAAA ...................((((((-----((.(.....).))))))))(((((....)))))((((((((((((...)))).)))).........)))).... ( -23.00, z-score = -0.92, R) >droSec1.super_0 19226608 99 + 21120651 GCUUGCUCCUCCUUUCCAUUUGCCA-----UCCCUAUCUGCGGUGGCAAGCUAUAAAGAUAGCGAUACUUGAGCGUCCCGCUGCGAGCCCCUUAAUUGUCAAAA ((((((.............((((((-----((.(.....).))))))))(((((....)))))........((((...))))))))))................ ( -27.30, z-score = -2.35, R) >droYak2.chr3R 19726545 99 + 28832112 GCUGCCCCAUCCCUUCCAUUUGCCA-----UCCCUAUCUGCGGUGGCAAGCUAUAAAGAUACCGAUACUCCAGUGUCCCGCUGCGACCCCCUUAAUUGUCAAAA ((.((...(((.......(((((((-----((.(.....).))))))))).......)))...(((((....)))))..)).))(((..........))).... ( -21.34, z-score = -2.41, R) >droEre2.scaffold_4820 1266041 99 - 10470090 GCCGCCCCAUCCGUUCCAUUUGCCA-----UCCCUAUCUGCGGUGGCAAGCUAUAAAGAUACCGAUACUCGAGUGUCCCGCUGCGACCCCCCUAAUUGUCAAAA ((.((.............(((((((-----((.(.....).))))))))).......(((((((.....)).)))))..)).))(((..........))).... ( -23.40, z-score = -2.49, R) >consensus GCUGCCUCCUCCUUUCCAUUUGCCA_____UCCCUAUCUGCGGUGGCAAGCUAUAAAGAUAGCGAUACUCGAGUGUCCCGCUGCGAGCCCCUUAAUUGUCAAAA ..................((((.((...........((.(((((((...(((((....)))))(((((....))))))))))))))..........)).)))). (-17.60 = -18.28 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:37:06 2011