| Sequence ID | dm3.chr3R |
|---|---|
| Location | 18,848,992 – 18,849,103 |
| Length | 111 |
| Max. P | 0.997690 |
| Location | 18,848,992 – 18,849,103 |
|---|---|
| Length | 111 |
| Sequences | 3 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 82.39 |
| Shannon entropy | 0.24743 |
| G+C content | 0.54575 |
| Mean single sequence MFE | -25.87 |
| Consensus MFE | -21.29 |
| Energy contribution | -21.73 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.05 |
| Mean z-score | -3.40 |
| Structure conservation index | 0.82 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.16 |
| SVM RNA-class probability | 0.997690 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 18848992 111 + 27905053 CGGCUGCUGUUAGUCCCUGCCUCUGUACUCCUGCC-CCACCGUACUCCCUUCCGUAUUCCGAUUGCGAUUCCUAUUCGGAUUCGUAGUCCUAUUCCAGCUGCUGUUACUUUG ((((.((((.(((...........((((.......-.....))))...............((((((((.(((.....))).)))))))))))...)))).))))........ ( -27.40, z-score = -3.95, R) >droSec1.super_0 19212605 112 + 21120651 CGGCUGCUGUUAGUCCCUGCCCCUGUUCUUGCCCCACCACCGUACACCCUUCCGUAUUCCGAUUGCGAUUCCUAUUCGGAUUCGUAGUCCUAUUCCAGCUGCUGUUACUUUG ((((.((((.(((............................((((........))))...((((((((.(((.....))).)))))))))))...)))).))))........ ( -26.50, z-score = -3.49, R) >droEre2.scaffold_4820 1249505 100 - 10470090 CGGCUGCUGUU-GCCCCAGCCCCUG---CCACGCC-CCUCCUGAUGCC-------GUUCCGAUUCCGAUUCCUAUUCGGAUUCGUAUUCCUAUUCCAGCUGCUGUUACUUUG ((((.((((..-((..(((.....(---(...)).-....)))..)).-------....(((.(((((.......))))).)))...........)))).))))........ ( -23.70, z-score = -2.76, R) >consensus CGGCUGCUGUUAGUCCCUGCCCCUGU_CUCACGCC_CCACCGUACACCCUUCCGUAUUCCGAUUGCGAUUCCUAUUCGGAUUCGUAGUCCUAUUCCAGCUGCUGUUACUUUG ((((.((((...((....))........................................((((((((.(((.....))).))))))))......)))).))))........ (-21.29 = -21.73 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:37:04 2011