| Sequence ID | dm3.chr3R |
|---|---|
| Location | 18,805,785 – 18,805,887 |
| Length | 102 |
| Max. P | 0.808159 |
| Location | 18,805,785 – 18,805,887 |
|---|---|
| Length | 102 |
| Sequences | 11 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 88.21 |
| Shannon entropy | 0.24492 |
| G+C content | 0.29077 |
| Mean single sequence MFE | -18.34 |
| Consensus MFE | -9.79 |
| Energy contribution | -9.77 |
| Covariance contribution | -0.01 |
| Combinations/Pair | 1.50 |
| Mean z-score | -2.78 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.76 |
| SVM RNA-class probability | 0.808159 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 18805785 102 + 27905053 --AGGGAAGAAACCAAAGAAUUUUCAUUAAAA--UUUUCAUUUAGUUGCGCAAUUAUUUUUGUGCAGCCAUUUUAAUAACACUAAUUUACCUUCAAUU--CCCAACUC --.(((((........((((((((....))))--))))......(((((((((......)))))))))............................))--)))..... ( -20.90, z-score = -3.68, R) >droSim1.chr3R 18619416 102 + 27517382 --AGGGAAGAAACCAAAGAAUUUUCAUUAAAA--UUUUCAUUUAGUUGCGCAAUUAUUUUUGUGCAGCCAUUUUAAUAACACUAAUUUACCUUCAAUU--CCCAACUC --.(((((........((((((((....))))--))))......(((((((((......)))))))))............................))--)))..... ( -20.90, z-score = -3.68, R) >droSec1.super_0 19169928 102 + 21120651 --AGGGAAGAAACCAAAGAAUUUUCAUUAAAA--UUUUCAUUUAGUUGCGCAAUUAUUUUUGUGCAGCCAUUUUAAUAACACUAAUUUACCUUCAAUU--CCCAACUC --.(((((........((((((((....))))--))))......(((((((((......)))))))))............................))--)))..... ( -20.90, z-score = -3.68, R) >droYak2.chr3R 19665593 102 + 28832112 --AGGGAAGAAACCAAAGAAUUUUCAUUAAAA--UUUUCAUUUAGUUGCGCAAUUAUUUUUGUGCAGCCAUUUUAAUAACACUAAUUUACCUUCAAUU--CCCAACUC --.(((((........((((((((....))))--))))......(((((((((......)))))))))............................))--)))..... ( -20.90, z-score = -3.68, R) >droEre2.scaffold_4820 1207361 102 - 10470090 --AGGGAAGAAACCAAAGAAUUUUCAUUAAAA--UUUUCAUUUAGUUGCGCAAUUAUUUUUGUGCAGCCAUUUUAAUAACACUAAUUUACCUUCAAUU--CCCAACUC --.(((((........((((((((....))))--))))......(((((((((......)))))))))............................))--)))..... ( -20.90, z-score = -3.68, R) >droAna3.scaffold_13340 11182283 102 - 23697760 --AAGGUAGAAACCAAAGAAUUUUCAUUAAAA--UUUUCAUUUAGUUGCGCAAUUAUUUUUGUGCAGCCAUUUUAAUAACACUAAUUUACCUUCAAUU--UCAAACUC --((((((((......((((((((....))))--))))......(((((((((......))))))))).................)))))))).....--........ ( -20.40, z-score = -3.95, R) >dp4.chr2 24717869 108 - 30794189 GGGCAAUGGAAACCAAAGAAUUUUCAUUAAAAAAUGUUCAUUUAGUUGCACAAUUAUUUUUGUGCAGCAAUUUUAAUAACACUAAUUUACCUUCAAUUUUCUCAACUC ((..((((((((........))))))))................(((((((((......))))))))).....................))................. ( -18.90, z-score = -2.14, R) >droPer1.super_19 54353 108 - 1869541 GGGCAAUGGAAACCAAAGAAUUUUCAUUAAAAAAUGUUCAUUUAGUUGCACAAUUAUUUUUGUGCAGCAAUUUUAAUAACACUAAUUUACCUUCAAUUUUCUCAACUC ((..((((((((........))))))))................(((((((((......))))))))).....................))................. ( -18.90, z-score = -2.14, R) >droVir3.scaffold_12822 3993097 100 - 4096053 --CUGAACAAAACCAAAGAAUUUUCAUUAAAA--UUCUCAUUUAGCUGCGCAAUUAUUUCAGUGCAGCAAUUUUAAUAACACUAAUUUACCUUCAGUU--UUCAAC-- --(((((.........((((((((....))))--))))......(((((((..........))))))).......................)))))..--......-- ( -18.90, z-score = -3.76, R) >droMoj3.scaffold_6540 1347336 102 - 34148556 --AGGAACAAAACCAAAGCAUUUUCAUUAAAA--CUCUCAUUAAGUUGCGCAAUUAUUCCAAUGUAACUAUUUUAAUAACACUAAUUUACCUUCAGCU--UGCAGCUC --.((.......)).((((.(((.....))).--.........(((((((............)))))))..........................)))--)....... ( -6.20, z-score = 1.70, R) >droGri2.scaffold_15074 3609886 102 + 7742996 --CGCAACAAAACCAAAGAAUUUUCAUUAAAA--UUCUCAUUUAGUUGCGCAAUUAUUUCUGGGCAGCAAUUUUAAUAACACUAAUUUACCUUCAGUU--UUCAACUC --......(((((...((((((((....))))--))))......(((((.((........)).)))))...........................)))--))...... ( -13.90, z-score = -1.88, R) >consensus __AGGGAAGAAACCAAAGAAUUUUCAUUAAAA__UUUUCAUUUAGUUGCGCAAUUAUUUUUGUGCAGCCAUUUUAAUAACACUAAUUUACCUUCAAUU__CCCAACUC ............................................((((((((........))))))))........................................ ( -9.79 = -9.77 + -0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:36:55 2011