| Sequence ID | dm3.chr3R |
|---|---|
| Location | 18,783,154 – 18,783,207 |
| Length | 53 |
| Max. P | 0.804451 |
| Location | 18,783,154 – 18,783,207 |
|---|---|
| Length | 53 |
| Sequences | 6 |
| Columns | 58 |
| Reading direction | reverse |
| Mean pairwise identity | 73.90 |
| Shannon entropy | 0.47550 |
| G+C content | 0.39764 |
| Mean single sequence MFE | -9.50 |
| Consensus MFE | -6.64 |
| Energy contribution | -6.62 |
| Covariance contribution | -0.03 |
| Combinations/Pair | 1.62 |
| Mean z-score | -1.04 |
| Structure conservation index | 0.70 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.74 |
| SVM RNA-class probability | 0.804451 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 18783154 53 - 27905053 ----AAAGUUCAUAGUAAGCCACA-AGUUGUCCUCAUCGAUUCGAGGAUUCCAUUGAA ----..................((-((..((((((........))))))..).))).. ( -10.40, z-score = -1.84, R) >droSim1.chr3R 18595949 53 - 27517382 ----AAAGUUCAUAUUAAGCCACA-AGUUGUCCUCGUCGAUUCGAGGAUUCCAUUGAA ----..................((-((..(((((((......)))))))..).))).. ( -13.00, z-score = -2.82, R) >droSec1.super_0 19147265 53 - 21120651 ----AAAGUUCAUAGUAAGCCACA-AGUUGUCCUCGUCGAUUCGAGGAUUCCAUUGAA ----..................((-((..(((((((......)))))))..).))).. ( -13.00, z-score = -2.77, R) >droYak2.chr3R 19641249 53 - 28832112 ----AAAGUUCACAGUAAGCCACA-AGUUGUCCUCGUCGAUUCGAAGAUUCCAUUGAA ----..................((-((..(((.(((......))).)))..).))).. ( -6.50, z-score = -0.09, R) >droEre2.scaffold_4820 1184040 53 + 10470090 ----AAAGUUCACAGUAAGCCACA-AGUUGUCCUCGUCGAUGCUGGGAUUCCAUUGAA ----..................((-((..(((((.((....)).)))))..).))).. ( -7.90, z-score = 0.65, R) >droAna3.scaffold_13340 11159335 58 + 23697760 AGGUAUUGCCGCUCUUCAAUGUUACAGAUGUACACACAAAUAUAUAUAAUAUAUAGCA .((.....))(((.....((((((...(((((........))))).))))))..))). ( -6.20, z-score = 0.65, R) >consensus ____AAAGUUCAUAGUAAGCCACA_AGUUGUCCUCGUCGAUUCGAGGAUUCCAUUGAA ..........................(..(((((((......)))))))..)...... ( -6.64 = -6.62 + -0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:36:52 2011