| Sequence ID | dm3.chr3R |
|---|---|
| Location | 18,782,507 – 18,782,600 |
| Length | 93 |
| Max. P | 0.866236 |
| Location | 18,782,507 – 18,782,600 |
|---|---|
| Length | 93 |
| Sequences | 4 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 83.09 |
| Shannon entropy | 0.24799 |
| G+C content | 0.59416 |
| Mean single sequence MFE | -40.12 |
| Consensus MFE | -31.71 |
| Energy contribution | -32.27 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.89 |
| Structure conservation index | 0.79 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.98 |
| SVM RNA-class probability | 0.866236 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 18782507 93 + 27905053 CCAUGGACAGAAAAUGGGAAUGUGGGGCAGGCAGGAUAGCAAGCAUGCAGUGCUCCCAGCGAGCGAGUCAUCCUGCCUCCUCCAUUGCCAUUG------------------ ............(((((.((((.((((.(((((((((.(((....)))..(((((.....)))))....))))))))))))))))).))))).------------------ ( -40.90, z-score = -2.84, R) >droSim1.chr3R 18595311 92 + 27517382 CCAUGGGCAGAAAAUGGGAAUG-GGGCCAGGCAGGAUAGCGAGCAUGCAGUGCUCCCACCGAGCGAGUCAUCCUGCCACCUCCAUUGCCAUUG------------------ ............(((((.((((-(((...((((((((..(..((...(.(((....))).).))..)..))))))))..))))))).))))).------------------ ( -37.80, z-score = -1.73, R) >droSec1.super_0 19146618 92 + 21120651 CCAUGGGCAGAAAAUGGGAAUG-GGGGCAGGCAGGAUAGCGAGCAUGCAGUGCUCCCACCGAGCGAGUCAUCCUGCCACCUCCAAUGCCAUUG------------------ ............(((((.(.((-((((..((((((((..(..((...(.(((....))).).))..)..)))))))).)))))).).))))).------------------ ( -37.60, z-score = -1.58, R) >droYak2.chr3R 19640553 108 + 28832112 CCAUGGGCAGAAAA--GGAAUG-GGGCCAGGCGGGAUAGCAAGCAUGCAGUGCUCCCUGGGAGCGAGUCAUCCUGCCUCCUCCAUUCCCAUCCCCAUCGCCAUCGCCAUUG ..(((((..((...--((((((-(((..(((((((((.(((....)))..((((((...))))))....))))))))).)))))))))..))))))).............. ( -44.20, z-score = -1.40, R) >consensus CCAUGGGCAGAAAAUGGGAAUG_GGGCCAGGCAGGAUAGCAAGCAUGCAGUGCUCCCACCGAGCGAGUCAUCCUGCCACCUCCAUUGCCAUUG__________________ ............(((((.((((.(((...((((((((.(((....)))..(((((.....)))))....)))))))).))).)))).)))))................... (-31.71 = -32.27 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:36:51 2011