| Sequence ID | dm3.chr3R |
|---|---|
| Location | 18,775,111 – 18,775,206 |
| Length | 95 |
| Max. P | 0.628467 |
| Location | 18,775,111 – 18,775,206 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 81.31 |
| Shannon entropy | 0.34252 |
| G+C content | 0.38395 |
| Mean single sequence MFE | -23.35 |
| Consensus MFE | -9.81 |
| Energy contribution | -10.65 |
| Covariance contribution | 0.84 |
| Combinations/Pair | 1.21 |
| Mean z-score | -2.54 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.29 |
| SVM RNA-class probability | 0.628467 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 18775111 95 - 27905053 AAGACAUUGCCCGACUUGAUGCAUAUUUUAAUAUCUCUCACUCGAUAUAAAACGGCAGCCAUUCAUGCAUCCAUGGG--------CAAUCAAAUGUCAUUUUA ..(((((((((((....(((((((......(((((........))))).....((...))....)))))))..))))--------)).....)))))...... ( -24.40, z-score = -3.13, R) >droSim1.chr3R 18586420 95 - 27517382 AAGACAUUUCCGGCCUUGAUGCAUAUUUUAAUAUCUCUCACUCGAUAUAAAACGGCAGCCAUUCAUGCAUCCAUGGG--------CAAUCAAAUGUCAUUUUA ..(((((((...((((.(((((((......(((((........))))).....((...))....)))))))...)))--------)....)))))))...... ( -25.20, z-score = -3.51, R) >droSec1.super_0 19139444 95 - 21120651 AAGACAUUUCCGGCCUUGAUGCAUAUUUUAAUAUCUCUCACUCGAUAUAAAACGGCAGCCAUUUAUGCAUCCAUGGG--------CAAUCAAAUGUCACUUUA ..(((((((...((((.((((((((.....(((((........))))).....((...))...))))))))...)))--------)....)))))))...... ( -26.30, z-score = -4.06, R) >droYak2.chr3R 19632887 102 - 28832112 ACGAUGUGGCUGGCCUUGCUGCAUAUUUUAAUAUCUCUCACUCGAUAUAAAACAGCAGCCAUUCAUGCAUCCAUGGG-CAAUGGGCAAUCAAAUGUCAUUUUA ..(((.((..((.((.(((((....(((((.((((........))))))))))))))(((...((((....))))))-)...)).))..))...)))...... ( -23.60, z-score = -0.22, R) >droEre2.scaffold_4820 1176305 95 + 10470090 AAGACACGGCCGGCCUUGCUGCAUAUUUUAAUAUCUCUCACUCGAUAGAAAACGGCAGCCAUUCAUGCAUCCAUGGG--------CAAUCAAAUGUCAUUUUA ..((((..(...(((..(((((...((((..((((........))))))))...)))))....((((....))))))--------)...)...))))...... ( -21.00, z-score = -0.82, R) >droAna3.scaffold_13340 11150298 102 + 23697760 AAGACAUUCCUUUAUUUUCUGCAUAUUUCAAUAUUUCACUUUU-CCAUCAAAUAGCAGCUAUGCACUUACUCAUGCAUCCAUGAGCAAUCGAAUGUCAUUUUA ..(((((((..........((((((......(((((.......-.....))))).....))))))....((((((....)))))).....)))))))...... ( -19.60, z-score = -3.50, R) >consensus AAGACAUUGCCGGCCUUGAUGCAUAUUUUAAUAUCUCUCACUCGAUAUAAAACGGCAGCCAUUCAUGCAUCCAUGGG________CAAUCAAAUGUCAUUUUA ..((((((...........(((...(((((.((((........)))))))))..)))....((((((....))))))..............))))))...... ( -9.81 = -10.65 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:36:47 2011