| Sequence ID | dm3.chr3R |
|---|---|
| Location | 18,772,696 – 18,772,775 |
| Length | 79 |
| Max. P | 0.619989 |
| Location | 18,772,696 – 18,772,775 |
|---|---|
| Length | 79 |
| Sequences | 6 |
| Columns | 81 |
| Reading direction | forward |
| Mean pairwise identity | 82.34 |
| Shannon entropy | 0.33365 |
| G+C content | 0.39528 |
| Mean single sequence MFE | -16.32 |
| Consensus MFE | -12.44 |
| Energy contribution | -12.25 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.35 |
| Mean z-score | -1.26 |
| Structure conservation index | 0.76 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.619989 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 18772696 79 + 27905053 GCGUCUUAAAGUUCAUUUGACUGCAAAAUUUGUGCAAUUUCACACAAGCGUGCGUCUUUGUCCCGAGACAAUAUAAAAU-- ..(((((...(..((...(((.(((...((((((........))))))..))))))..))..).)))))..........-- ( -17.30, z-score = -1.59, R) >droAna3.scaffold_13340 11148044 79 - 23697760 GCGUCUUAAAGUUCAUUUGGCUGCGAAAUUUGUGCAAUUUCACACAAGCGUGCGCUUUUGUCUCGAGACAAUAUAAAAU-- ..(((((..((..((...(((.(((...((((((........))))))..))))))..)).)).)))))..........-- ( -16.60, z-score = -0.06, R) >droEre2.scaffold_4820 1173960 79 - 10470090 GCGUCUCGAAGUCCAUUUGACUGCAAAAUUUGUGCAAUUUCACACAAGCGUGCGUCUUUGUCCCGAGACAAUAUAAAAU-- ..((((((..(..((...(((.(((...((((((........))))))..))))))..))..)))))))..........-- ( -21.70, z-score = -2.95, R) >droYak2.chr3R 19630330 81 + 28832112 GCGUCUUAAAGUUCAUUUGACUGCAAAAUGUGUGCAAUUUCACACAAGCGUGCGUCUUUGUCCCGAGACAAUAUAAAAAAU ..(((((...(..((...(((.(((...((((((......))))))....))))))..))..).)))))............ ( -19.30, z-score = -2.08, R) >droSim1.chr3R 18583915 79 + 27517382 GCGUCUUAAAGUUCAUUUGACUGCAAAAUUUGUGCAAUUUCACACAAGCGUGCGUCUUUGUCCCGAGACAAUAUAAAAU-- ..(((((...(..((...(((.(((...((((((........))))))..))))))..))..).)))))..........-- ( -17.30, z-score = -1.59, R) >dp4.chr2 24682999 62 - 30794189 ----CUUAAAGUUCAUUUAGCUGCGAAAUUUCCACAAUUUUACACAAGCCUGCACUCUGGCCCCAA--------------- ----...............(.((..(((((.....)))))..)))..(((........))).....--------------- ( -5.70, z-score = 0.70, R) >consensus GCGUCUUAAAGUUCAUUUGACUGCAAAAUUUGUGCAAUUUCACACAAGCGUGCGUCUUUGUCCCGAGACAAUAUAAAAU__ ..(((((...(..((...(((.(((...((((((........))))))..))))))..))..).)))))............ (-12.44 = -12.25 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:36:46 2011