| Sequence ID | dm3.chr3R |
|---|---|
| Location | 18,751,299 – 18,751,373 |
| Length | 74 |
| Max. P | 0.679302 |
| Location | 18,751,299 – 18,751,373 |
|---|---|
| Length | 74 |
| Sequences | 5 |
| Columns | 74 |
| Reading direction | forward |
| Mean pairwise identity | 63.49 |
| Shannon entropy | 0.64423 |
| G+C content | 0.39470 |
| Mean single sequence MFE | -10.89 |
| Consensus MFE | -4.47 |
| Energy contribution | -5.11 |
| Covariance contribution | 0.64 |
| Combinations/Pair | 1.43 |
| Mean z-score | -1.22 |
| Structure conservation index | 0.41 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.40 |
| SVM RNA-class probability | 0.679302 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 18751299 74 + 27905053 UUACAUAUAGCAUUAAAACAUCCAAGACUCCGCAGUCCCAGAUACUUUUCCCCAAACCAAAUUGGACUGCCUUC ...............................(((((((.........................))))))).... ( -9.91, z-score = -2.14, R) >droSim1.chr3R 18562387 74 + 27517382 UCUAUUAUGAUAUUAUAGAAUCCAAGAUUCCGCAGUCCCAGAUACUUUUCCCCAAACUAAAUUGGACUGCCUUA .................(((((...))))).(((((((.........................))))))).... ( -12.01, z-score = -2.10, R) >droSec1.super_0 19116140 74 + 21120651 UCUAUUAUGAUAUUAUAGAAUCCAAGAUUCCGCAGUCCCAGAUACUUUUCCCCAAACUUAAUUGGGCUGCCUUC .................(((((...))))).((((.(((((.((..(((....)))..)).))))))))).... ( -13.40, z-score = -1.61, R) >droYak2.chr3R 19608587 66 + 28832112 UCAGACAUGGAAUCAUUGAAACCCAGACUC-GCAGU------UACUUUUUGCCAG-CGAAAUUAGGCUGUGGAC .......(((............)))...((-(((((------(...(((((....-)))))...)))))))).. ( -12.40, z-score = -0.01, R) >droVir3.scaffold_12822 3953328 67 - 4096053 UUAGAUAUUGAGUCGAUAUACACAACAAUUCGAACC-------ACAUUUCACCAUAGUAAACAUGGAUGCAUAC ...((.((((..((((.............))))..)-------).)).)).((((.(....)))))........ ( -6.72, z-score = -0.23, R) >consensus UCAAAUAUGGAAUUAUAGAAUCCAAGACUCCGCAGUCCCAGAUACUUUUCCCCAAACUAAAUUGGGCUGCCUUC ...............................(((((((.........................))))))).... ( -4.47 = -5.11 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:36:34 2011