| Sequence ID | dm3.chr3R |
|---|---|
| Location | 18,745,430 – 18,745,523 |
| Length | 93 |
| Max. P | 0.548015 |
| Location | 18,745,430 – 18,745,523 |
|---|---|
| Length | 93 |
| Sequences | 7 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 76.27 |
| Shannon entropy | 0.43611 |
| G+C content | 0.50039 |
| Mean single sequence MFE | -28.64 |
| Consensus MFE | -13.34 |
| Energy contribution | -13.19 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.53 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.548015 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 18745430 93 + 27905053 ACAUUUGCAUGCCGCGUCCCCUGGGCGAUUGCCAUGCGAUAAUUAUGGCAG-UCGAAUC------CCG-----------AAAAGGACGCAGCGAGAAAUCCCCAA--GAAAUU ...((((...((.((((((..(((((((((((((((.......))))))))-)))...)------)))-----------....)))))).))((....))..)))--)..... ( -34.90, z-score = -3.85, R) >droWil1.scaffold_181089 11081766 113 - 12369635 AAAUUUACACGUUAUUCUCCCCCGAUGAUAGCCAAGUGAUAAUUAUACCAAAGAGAGCUCUUUCUCUGCGUUCAAUCACAAGACGAAAUGGCAAAAAGCCCGCAACAAAAAUU ..........((((((.((....)).))))))...(((((......((...((((((....))))))..))...)))))..........(((.....)))............. ( -16.90, z-score = -0.69, R) >droAna3.scaffold_13340 11120871 99 - 23697760 ACAUUUGCACGCUGUGUCCCAGGGGCGAUUGCCAGGCUAUAAUUAUGGCAG-GCAAGCCGUAAACCCG-----------AAAAAGACGAAACGGCAAAUCCCCAA--GAAAUU ..((((((.((...((((...((((((.(((((..(((((....))))).)-))))..)))...))).-----------.....))))...))))))))......--...... ( -28.80, z-score = -1.18, R) >droEre2.scaffold_4820 1147176 92 - 10470090 ACAUUUGCAGGCUGCGUCCC-UGGGCGAUUGCUAUGCGAUAAUUAUGGCAG-GCGUAUC------CCG-----------AAAAGGACGCAGCGAGAAAUCCCCAA--GAAAUU ...((((...(((((((((.-((((((.((((((((.......))))))))-.))...)------)))-----------....)))))))))((....))..)))--)..... ( -32.00, z-score = -2.01, R) >droYak2.chr3R 19602594 93 + 28832112 ACAUUUGCACGCUGCGUCCCCUGGGCGAUUGCUAUGCGAUAAUUAUGGCAG-GCGAGUC------CCG-----------AAAAGGACGCAGCUAGAAAUCCCCAA--GAAAUU ..........(((((((((..((((...(((((.(((.((....)).))))-))))..)------)))-----------....))))))))).............--...... ( -32.70, z-score = -2.58, R) >droSec1.super_0 19110340 93 + 21120651 ACAUUUGCACGCCGCGUCCCCUGGGCGAUUGCCAUGCGAUAAUUAUGGCAG-GCGAAUA------CCG-----------AAAAGGACGCCGCGAGAAAUCCCCAA--GAAAUU .........(((.((((((..(((.((.((((((((.......))))))))-.))....------)))-----------....)))))).)))............--...... ( -29.80, z-score = -1.70, R) >droSim1.chr3R 18556510 93 + 27517382 ACAUUUGCACGCCGCGUCCCCUGGGCGAUUGCCAUGCGAUAAUUAUGGCAG-GCGAAUC------CCG-----------AAAAGCACGCAGCGAGAAAUCCCCAA--GAAAUU .........(((.(((((...((((...(((((.(((.((....)).))))-))))..)------)))-----------....).)))).)))............--...... ( -25.40, z-score = -0.38, R) >consensus ACAUUUGCACGCUGCGUCCCCUGGGCGAUUGCCAUGCGAUAAUUAUGGCAG_GCGAAUC______CCG___________AAAAGGACGCAGCGAGAAAUCCCCAA__GAAAUU ..........((.((((((....(((....)))..((.((....)).))..................................)))))).))..................... (-13.34 = -13.19 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:36:33 2011