| Sequence ID | dm3.chr2L |
|---|---|
| Location | 8,348,021 – 8,348,156 |
| Length | 135 |
| Max. P | 0.618645 |
| Location | 8,348,021 – 8,348,156 |
|---|---|
| Length | 135 |
| Sequences | 8 |
| Columns | 146 |
| Reading direction | forward |
| Mean pairwise identity | 68.95 |
| Shannon entropy | 0.59753 |
| G+C content | 0.39992 |
| Mean single sequence MFE | -21.00 |
| Consensus MFE | -9.66 |
| Energy contribution | -9.40 |
| Covariance contribution | -0.26 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.10 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.618645 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 8348021 135 + 23011544 UGGCGCUUAUCACGUGCUUUUAAACCCCAACAAUGUUGUCGUUCGGCUGGAGAAUUUAAGACCCUGCCUUCAGAUCCCC-AAAACUAGCCAUCAAUCACAAUGAUUUAUGAUAA--AUUUCCAACAAUAAAUCAACAC-------- .(((((.......)))))....(((..((((...))))..))).((((((.........((..(((....))).))...-....))))))...........((((((((.....--..........))))))))....-------- ( -20.65, z-score = 0.07, R) >droSim1.chr2L_random 430039 135 + 909653 UGGCGCUUAUCACGUGCCAUUAAACCCCAACAAUGUUGUCGUUCCGCUGGAGAAUUUAAGACCCUGCGUUCAGGCCCCC-AAAACUCGCCAUCAAUCACAAUGAUUUAUGAUAA--AUUUCCAAUAAUAAAUCAAAAA-------- ((((((.......))))))...(((..((((...))))..)))....((((((.((((....((((....)))).....-.........(((.((((.....)))).))).)))--)))))))...............-------- ( -23.60, z-score = -0.69, R) >droSec1.super_3 3843458 135 + 7220098 UGGCGCUUAUCACGUGCCAUUAAAUCCCAACAAUGUUGUCGUUCCGCUGGAGAAUUUAAGACCCUGCGUUCAGGCCCCC-AAAACUCGCCAUCAAUCAUAAUGAUUUAUGAUAA--AUUUCCAAUAAUAAAUCAACAG-------- ((((((.......))))))..............(((((.........((((((.........((((....)))).....-..............(((((((....)))))))..--.)))))).........))))).-------- ( -26.77, z-score = -1.71, R) >droYak2.chr2L 10986329 136 + 22324452 UGGCGCUUAUCACGUGCCAUUAAAGCCCAACAAUGUUGUCAUUGCGCUGGAGAAUUUAAGGCCCUGCCUUCAGACCCCCGAAAACUUAACAUCAAUCACAAUGAUUUAUGAUAA--AUUCCCCAUAAUAAAUCAACAA-------- ((((((.......))))))....(((....(((((....))))).)))((.(((((((((((...))))....................(((.((((.....)))).))).)))--)))).))...............-------- ( -28.00, z-score = -1.96, R) >droEre2.scaffold_4929 17257595 145 + 26641161 UGGCUCUUAUCACGUGCCAUUAAACCCCAACAAUGUUUUCAUUCCGCCCCAGAAUUUGAGAUCCCGCCUUCAGACCCCC-AAAACUCGCCAUCAAUCACAAUGAUUUAUGAUUAUUAUUUCCAAUAAUAAAUCAACAGAGCAACAG ((((.(.......).))))..............((((.................((((((........)))))).....-....(((..(((.((((.....)))).))).(((((((.....))))))).......))).)))). ( -16.10, z-score = -0.20, R) >dp4.chr4_group3 7937965 103 + 11692001 UGGCGCUUAUCACGUGCCAUUAAACCC--ACAAC------------------------AAGCUGUGCCUCA----CCCCAAAAGACAGCCAUCAAUCAGAAUGAUUUAUGAUAA--AUU---AAAAAAGAAUAAACAC-------- ((((((.......))))))........--.....------------------------..(((((......----.........)))))(((.((((.....)))).)))....--...---................-------- ( -16.36, z-score = -1.78, R) >droPer1.super_1 9385285 103 + 10282868 UGGCGCUUAUCACGUGCCAUUAAACCC--ACAAC------------------------AAGCUGUGCCUCA----CCCCAAAAGGCAGCCAUCAAUCAGAAUGAUUUAUGAUAA--AUU---AAAAAAGAAUAAACAC-------- ((((((.......))))))........--.....------------------------..(((..((((..----.......)))))))(((.((((.....)))).)))....--...---................-------- ( -17.60, z-score = -1.27, R) >droWil1.scaffold_180703 2423708 106 - 3946847 UGUUGAUAAUCACGUGACGUUGAAGCUCAACGAACCCUC----------------------CCCCCCAUACAGAACCAC---AUUGUGCUAUCAAUCAUUGUGAUUUAUGAUUG--AUUUUUGA--ACAAAUCAA----------- ..(((((......(((.(((((.....))))).......----------------------.....(.....)...)))---.((((...(((((((((........)))))))--))......--)))))))))----------- ( -18.90, z-score = -1.29, R) >consensus UGGCGCUUAUCACGUGCCAUUAAACCCCAACAAUGUUGUC_UUCCGCUGGAGAAUUUAAGACCCUGCCUUCAGACCCCC_AAAACUAGCCAUCAAUCACAAUGAUUUAUGAUAA__AUUUCCAAUAAUAAAUCAACAC________ ((((((.......))))))......................................................................(((.((((.....)))).))).................................... ( -9.66 = -9.40 + -0.26)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:25:46 2011