| Sequence ID | dm3.chr3R |
|---|---|
| Location | 18,727,405 – 18,727,519 |
| Length | 114 |
| Max. P | 0.569515 |
| Location | 18,727,405 – 18,727,519 |
|---|---|
| Length | 114 |
| Sequences | 5 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 92.72 |
| Shannon entropy | 0.11993 |
| G+C content | 0.44131 |
| Mean single sequence MFE | -28.30 |
| Consensus MFE | -25.04 |
| Energy contribution | -24.80 |
| Covariance contribution | -0.24 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.44 |
| Structure conservation index | 0.88 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.569515 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 18727405 114 - 27905053 AAAACUGGGCUUGAACGCAACUUCUUGCCAAAGGCAAGACAAU-GCUGAACUGGAGAAAUGCUCGUAAGAAUAAGACCAAGUCCAAAGUGCAUGGCAGAAAAGCAAAUCCAACAA .....((((((((...(((...(((((((...)))))))...)-)).......(((.....))).............))))))))..((.....((......)).......)).. ( -27.10, z-score = -0.91, R) >droEre2.scaffold_4820 1129388 108 + 10470090 -----UGGACUUGGACGCAACUUCUUGCCAAAGGCAAGACAAUGGCUGAACUG--AAAACGCUCGUAAGAAUAAGACCAAGUCCAAAGUGCAUGGCAGAAAAGCAAAUCCAAUAA -----(((((((((..((....(((((((...))))))).....)).......--.......((....))......))))))))).........((......))........... ( -29.20, z-score = -2.33, R) >droYak2.chr3R 19583853 111 - 28832112 -AAACUGGACUUGGACGCAACUUCUUGCCAAAGGCAAGACAAU-GCUGAACUG--AAAACGCUCGCAAGAAUAAGAGCAAGUCCAAAGUGCAUGGCAGAAAAGCAAAUCCAAUAA -....((((.(((((((((...(((((((...)))))))...)-)).......--.....((((..........))))..))))))........((......))...)))).... ( -31.40, z-score = -2.63, R) >droSec1.super_0 19092442 110 - 21120651 ----CUGGGCUUGAACGCAACUUCUUGCCAAAGGCAAGACAAU-GCUGAACUGGAGAAACGCUCGUAAGAAUAAGACCAAGUCCAAAGUGCAUGGCAGAGAAGCAAAUCCAAUAA ----.((((((((...(((...(((((((...)))))))...)-)).......(((.....))).............)))))))).........((......))........... ( -26.90, z-score = -0.68, R) >droSim1.chr3R 18538550 110 - 27517382 ----CUGGGCUUGAACGCAACUUCUUGCCAAAGGCAAGACAAU-GCUGAACUGGAGAAACGCUCGUAAGAAUAAGACCAAGUCCAAAGUGCAUGGCAGAGAAGCAAAUCCAAUAA ----.((((((((...(((...(((((((...)))))))...)-)).......(((.....))).............)))))))).........((......))........... ( -26.90, z-score = -0.68, R) >consensus ____CUGGGCUUGAACGCAACUUCUUGCCAAAGGCAAGACAAU_GCUGAACUGGAGAAACGCUCGUAAGAAUAAGACCAAGUCCAAAGUGCAUGGCAGAAAAGCAAAUCCAAUAA .....((((((((...((....(((((((...))))))).....))................((....)).......)))))))).........((......))........... (-25.04 = -24.80 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:36:29 2011