| Sequence ID | dm3.chr3R |
|---|---|
| Location | 18,722,250 – 18,722,340 |
| Length | 90 |
| Max. P | 0.537694 |
| Location | 18,722,250 – 18,722,340 |
|---|---|
| Length | 90 |
| Sequences | 4 |
| Columns | 90 |
| Reading direction | forward |
| Mean pairwise identity | 98.89 |
| Shannon entropy | 0.01803 |
| G+C content | 0.50000 |
| Mean single sequence MFE | -27.43 |
| Consensus MFE | -27.58 |
| Energy contribution | -27.20 |
| Covariance contribution | -0.38 |
| Combinations/Pair | 1.07 |
| Mean z-score | -0.75 |
| Structure conservation index | 1.01 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.537694 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 18722250 90 + 27905053 UUUUUGCGCAAAUGUCCUGCAAUCACGACGCGGCCUGUUUGCCAGCCGCUUGUUUAUUUGCUUGUUUGUUUGUAGGUCCGGCAGUGCAAG ...((((((...((.(((((((.((.((((((((.((.....)))))))..((......))..))))).)))))))..))...)))))). ( -28.20, z-score = -1.02, R) >droEre2.scaffold_4820 1124244 90 - 10470090 UUUUUGCGCAAAUGUCCUGCAAUCACGACGCGGCCUGUUUGCCAGCCGCUUGUUUAUUUGCUUGUUUGUUUGUGGGUCCGGCAGUGCAAG ...((((((...((.((..(((.((.((((((((.((.....)))))))..((......))..))))).)))..))..))...)))))). ( -27.00, z-score = -0.17, R) >droSec1.super_0 19087384 90 + 21120651 UUUUUGCGCAAAUGUCCUGCAAUCACGACGCGGCCUGUUUGCCAGUCGCUUGUUUAUUUGCUUGUUUGUUUGUAGGUCCGGCAGUGCAAG ...((((((...((.(((((((.((.(((..(((......))).)))((..((......))..)).)).)))))))..))...)))))). ( -26.30, z-score = -0.76, R) >droSim1.chr3R 18533453 90 + 27517382 UUUUUGCGCAAAUGUCCUGCAAUCACGACGCGGCCUGUUUGCCAGCCGCUUGUUUAUUUGCUUGUUUGUUUGUAGGUCCGGCAGUGCAAG ...((((((...((.(((((((.((.((((((((.((.....)))))))..((......))..))))).)))))))..))...)))))). ( -28.20, z-score = -1.02, R) >consensus UUUUUGCGCAAAUGUCCUGCAAUCACGACGCGGCCUGUUUGCCAGCCGCUUGUUUAUUUGCUUGUUUGUUUGUAGGUCCGGCAGUGCAAG ...((((((...((.(((((((.((.((((((((.((.....)))))))..((......))..))))).)))))))..))...)))))). (-27.58 = -27.20 + -0.38)
| Location | 18,722,250 – 18,722,340 |
|---|---|
| Length | 90 |
| Sequences | 4 |
| Columns | 90 |
| Reading direction | reverse |
| Mean pairwise identity | 98.89 |
| Shannon entropy | 0.01803 |
| G+C content | 0.50000 |
| Mean single sequence MFE | -25.67 |
| Consensus MFE | -24.58 |
| Energy contribution | -24.82 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.11 |
| Structure conservation index | 0.96 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chr3R 18722250 90 - 27905053 CUUGCACUGCCGGACCUACAAACAAACAAGCAAAUAAACAAGCGGCUGGCAAACAGGCCGCGUCGUGAUUGCAGGACAUUUGCGCAAAAA .((((......(......)..........((((((......((((((........))))))(((.((....)).)))))))))))))... ( -26.50, z-score = -1.27, R) >droEre2.scaffold_4820 1124244 90 + 10470090 CUUGCACUGCCGGACCCACAAACAAACAAGCAAAUAAACAAGCGGCUGGCAAACAGGCCGCGUCGUGAUUGCAGGACAUUUGCGCAAAAA .((((......(....)............((((((......((((((........))))))(((.((....)).)))))))))))))... ( -26.80, z-score = -1.16, R) >droSec1.super_0 19087384 90 - 21120651 CUUGCACUGCCGGACCUACAAACAAACAAGCAAAUAAACAAGCGACUGGCAAACAGGCCGCGUCGUGAUUGCAGGACAUUUGCGCAAAAA .((((......(......)..........((((((......(((.(((.....)))..)))(((.((....)).)))))))))))))... ( -22.90, z-score = -0.74, R) >droSim1.chr3R 18533453 90 - 27517382 CUUGCACUGCCGGACCUACAAACAAACAAGCAAAUAAACAAGCGGCUGGCAAACAGGCCGCGUCGUGAUUGCAGGACAUUUGCGCAAAAA .((((......(......)..........((((((......((((((........))))))(((.((....)).)))))))))))))... ( -26.50, z-score = -1.27, R) >consensus CUUGCACUGCCGGACCUACAAACAAACAAGCAAAUAAACAAGCGGCUGGCAAACAGGCCGCGUCGUGAUUGCAGGACAUUUGCGCAAAAA .((((......(......)..........((((((......((((((........))))))(((.((....)).)))))))))))))... (-24.58 = -24.82 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:36:28 2011