| Sequence ID | dm3.chr3R |
|---|---|
| Location | 18,712,422 – 18,712,509 |
| Length | 87 |
| Max. P | 0.990313 |
| Location | 18,712,422 – 18,712,509 |
|---|---|
| Length | 87 |
| Sequences | 6 |
| Columns | 88 |
| Reading direction | forward |
| Mean pairwise identity | 70.36 |
| Shannon entropy | 0.56618 |
| G+C content | 0.54312 |
| Mean single sequence MFE | -30.90 |
| Consensus MFE | -14.84 |
| Energy contribution | -15.32 |
| Covariance contribution | 0.48 |
| Combinations/Pair | 1.44 |
| Mean z-score | -2.27 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.41 |
| SVM RNA-class probability | 0.990313 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 18712422 87 + 27905053 -UAAGGGGCGCAAAUCCCGGGCAAUCCAACAGAUACACCGAUGUAUCUGGAUUGAGGUGACAAAGGGUUGGGUUGCCAUGACCCACAG -...((((......)))).((((((((((((((((((....))))))).......(....).....)))))))))))........... ( -32.50, z-score = -2.47, R) >droAna3.scaffold_13340 11087363 77 - 23697760 CACAAGGGCGGGGAUUCCGGGCUGGCUGGCAGACA-----GUACUUCAGGGCUAAGAGGUCCAAAGGGUUACCCGCCCCGAG------ .....(((((((...((((((...((((.....))-----))..))).(((((....)))))...)))...)))))))....------ ( -32.30, z-score = -1.51, R) >droEre2.scaffold_4820 1114298 87 - 10470090 -UAAGGGGCGGAAUUCCCGGGCAAUCCAACAGAUACGCUGAUAUCUCGGGAUUGAGGUGACAAAGGGUUGGGUUGCCAUGACCCACAG -...(((.(((.....)))(((((((((((.....(..((.(((((((....))))))).))..).)))))))))))....))).... ( -34.10, z-score = -2.84, R) >droYak2.chr3R 19566147 87 + 28832112 -UAAGGGUCGGAAUUCCCGGGCAAUCCAACGGAUACUCUGAUGUCCUCGGAUUGAGGUGACAAAGGGUUGGGUUGCCAUGCACCACAG -....((((((.....)))((((((((((((((((......))))).........(....).....)))))))))))....))).... ( -31.40, z-score = -1.46, R) >droSec1.super_0 19077709 76 + 21120651 -UAAGGGGCG-----------CAAUCUAACAGAUACUCCGAUGUAUCUGGAUUGAGGUGACAAAGGGUUGGGUUGCCAUGACCCACAG -...(((..(-----------(((((((((((((((......)))))).......(....).....)))))))))).....))).... ( -26.40, z-score = -2.47, R) >droSim1.chr3R 18523762 76 + 27517382 -UAAGGGGCG-----------CAAUCCAACAGAUACUCCGAUGUAUCUGGAUUGAGGUGACAAAGGGUUGGGUUGCCAUGACCCACAG -...(((..(-----------(((((((((((((((......)))))).......(....).....)))))))))).....))).... ( -28.70, z-score = -2.88, R) >consensus _UAAGGGGCGGAA_UCCCGGGCAAUCCAACAGAUACUCCGAUGUAUCUGGAUUGAGGUGACAAAGGGUUGGGUUGCCAUGACCCACAG .....(((((.........(((((((((((.(.(((..((((.(....).))))..))).).....))))))))))).)).))).... (-14.84 = -15.32 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:36:24 2011